MmuINT0179262 @ mm10
Intron Retention
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122848910-122854817:-
Coord C1 exon
chr9:122854707-122854817
Coord A exon
chr9:122853989-122854706
Coord C2 exon
chr9:122848910-122853988
Length
718 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTTCCTCCCCCCCAACCAGGAG
3' ss Score
9.61
Exon sequences
Seq C1 exon
TGGGCTCCTCTCCCAAACCTGCTCTGATCTCCTGGCTAGAAGCCAGGAAGCCATGGGGCGTGAACATCTGCACGGTTCAGCTTAAGAGAGATGCTGATGCTGCGCCTGAAG
Seq A exon
GTGAGCTCTGTCAAGGGTACTGCATCGAGCCCCTCTTACATGTGCTTTTCTTTCATATGGTTAATTATATCACGAGGGACTTACTCCATTATTTGCTAGGACTTACTAAGGGGTGCTAGAACCCTGGGCCACTTTCTGCTTGACTTATAATCGGCCACTTTTTTTCAGCCTTGACCCTTCCCTAGCATCTCAGTATCAGTTCTTGCTCCTCACAGGGCTTCCCTGTTCTCTTTTCCACTGAGTTCTAATGCTCCTCATTTCTGTGTCTGCACTAACTCTGAATTACCTGTGTTCATCCATCCCATTCTGGCTCTTCCTTGTTTGATGTTTCCTTCTATGATGAGCTTAGATCTAGTTTTTCCGGCAAGGTCCTACGTGAAGCACCAGGTATTGACTTTTGGGGACTTTTATGTGGTGTTCCTGTGCCATAACTTTTCTCTGTTGTCTTGCTTTAATATTCTTTTTTTAGGTCTGTTTATTGCCCTGTTAGATTTGATTTCTGTGTCCCTTCCTCTATCTGCTGTATCTAGCCCTTTCTCCTCCCTTTCCTGTTATTTGACATACTTTTTCTTTGTCTTATCTTTGACTGTTTTGTATAAAGATAATGACAGGCAAGATTCTTGCTACTAAGAATCTATTTATAGTTTTTTTGCCTTTTCCAGTTCCAGATATTGAAGAAAAATATTTTCTTTCTTCCTCCTTCCTCCCCCCCAACCAG
Seq C2 exon
GAGGTAAGCTTCAGATTAAGCCAAACAAATTCATCTTGAAACAGAAACCTTCTGAATACATAGAAGCCTGTGTAAAGACATCAGTAAGTCCTGAGACAAGTGTTTCTGAGGAGACAGGGCTCAAAGAATCTTTTAAACAGAAGAGTAGGCTACAGACGTCCTGTGGAGACTCCATACAAATGAAAGAGATGAAGGAAGGAGCCGACATTAGTCAAAGGACAGGAAGAGAATCTGAAGTATTGAGAAACAATGATATTCTTGAGTTAAAACATGTTAAATGTGTGAGTGTTTCTAGAAAAAGGCTATCCTTTAAACATGGCTATGACAGAAACTTCAGAAAAAGTTCACACCATTATAATAATAAATATGGGGAAGGACTCAGAGGCACAGGTGAGGGGTTTGGTGTGTATCAGAATACTGGACTGAAAGAAAATGGAAAGGACAGATATGGAGAGACCTCAAGGAAGAGCTGGCATGCCCATCCTGAACATCGGCAGCCAAGCTACAGTGAAGAGGGCCTGTTTCAATGCAGGGTGTGTGGGAAAGCGTTCAAGTGGCGTTCAAACCGTATACGGCATGAGAAAATTCACACTGGAGTGAAACCTTACCAATGCAGCTTATGTGAGAAAGCTTTCCAACGTTTGTCATCCTACCGTCTGCACCAAAAAACCCATAGTAAACAGAAACGTGGATCCAGTAAGTACAAAAATGCCCTCACCTGCAGCTTGGATGTCAGTCACCATTTGACAGACCGGGATGAGAGGAAACACTTACACTGTAACCAGTGTGGGAAAAACTTCTCCTGTAAGTCCTATGCTATTGAACACCAAAGGATTCACACACAGGAGAAACCTTATAAATGTACCAGATGTAGGAAAACCTTTCGGTGGAAGTCAAACTTTTCTCGTCATATGAAATTACATCACAAAGAGGTGTATAAACAAGAGAAACGTCAAGAAGACTTCAAGCAGAGTTACAGGCAGTCTCAGGTTATCTCTACTGTAGAGAAAACTTTTCCATGTCAGAATTGTGGGAAAACTTTTACTCAAAAGAAATCACTCATTGAGCACCAGAGGATTCATACAGGGGAGAAACCGTACCAGTGTAGTGGGTGTGGAGAAACATTTACCTATAGGTCATCTTATATTATTCATATGAAGCGAACGCAACATGCTATTAAAATAAAGCCTGAGCATGGCTGCCTAACTTTTAGTCAGGGTGCAGTGTTTCCCATTCCTCGGGGTAGTCATAATACTGAGGGGTCTAATAAGTGTAAATACTGTGGCAAAGCCTTTCACAATCGCTCATTTCTTCTCATTCATGAGAGAGTTCACACTAGAGAGAAGCCCTATCAGTGCAGGGAGTGTGAAAAAGCCTTCCGATGGAGTTCCAATCTCTACCGACATCAGAGAAAACACTTTTTGCACAAGCGGTATAAGTATCGTGAAAGTAAAGAGACTTCAAATCTACAGTCAAAAATTCTCATTGATCAGAAGCCCTTTTGGTGTCAAGAATGTGGAAAAACCTTTACACGTAAAAGAAGCCTTTTAGATCATAAGGGAATACACAGTGGAGAGAGACGCTTTAAGTGCAACTTGTGTGAAAAATCTTTTGATAGAAACTATCGACTTGTTAATCACCAGAGGATCCACACTACAGAGCAACCACAGTGGCGTGATAAAGATTTTGTTGGGATACATGCCCGTTCTGTTGACCAGAGAAAACACAGCAACACGCTGCAGTCTGAATATGGCCTACATTCAGATAAGCCTGGCTTATCTTACTGTCAGGATGTAAGGTTAAATATTCAGGAACTAAGTGGAAAGCTCCGTAAAGAGTGTGATAACCCTTCTGATGAGAGTTCCAAGTCAATTGCATTCCAGAATGTGCCCACCAAGAAGAAAGCCTGCCACAAATGCAGCACTTGCGGGAAAACATTTAAAAAGCATTCACATCTTATTAGCCACAAGAGATGTCACACAAAAGAGAGGCCCTTCAAATGCATAGTGTGTGGGAAGACCTTCAGGTGGTCTTCCAATTTGACTCGGCATATGAAAAACCATGTTAGAAATTAGCCTGGGGTCTTCGATGACAGTGGGGGTGGGGAATAGTTCTTGGTCACATTCTAGAGAACTTTAGTGGTAGGCACTGGGGAAAACCTTTGTAAAGGTCCAGTCCTTTTTGGCTTGGATGTTCTTGGTGTGGAATCTTGATGATTTCAAAACTCAGGAATTTCTCAGTCTTCCTTCTGGAAAGAGATGTTGAAAAATAACAGAAAGTTCTCTGGGGTCTTTTAGGGATTCTGGCCCCTAGGTTTAGCCCAGGCCTCTGACAGCCAGGTCTCCTTAGATAATTCTTGCTGTTTGTGATTATTGGAAAGCATGTCTGTAGCCTAGTAAGCGTTGTCTGTTGGGAAGGGCCCATTTAGATCCCTAGTTCTTCAGGGTCAGCTTGTGTTGGTGCTGTTCTGCTGACTTTAAAACCTAGAACTTGTATTCTACATCAGATGTCTCCTGGGGGCCCCTGGTTGGGGCTTCAGTTTATAATTGGTTTTTGGTTATTAGCTATGGTCCTAAAGTAGTCTCAGTGTCAAGTGAAAAGGACAGGGTGCTAGGCTCCGTTGCTTGATCTGGACAGGCAGCATTACTCCATCATTTCAGCTAAGATACAAGAGCACTCCTCATGTGCCAGTGACCAGAACAGACAAAAACCCTGCTGTTTGGGGATCTGTAAGTCACTAAATGAGTTAGATCCTATTTTGGATGGTGATATGTGTTGAGGACAAAGTCATCCAGAGACGAATGGCAAGGAATCTGGTTAGGATGTGGATTGTAATTTTAAACAAACTGTCCAGGAAATAATGTTACTGACAGTGAAACTAAGTAGGACCAGGTGTTAGGAGGCATTGACATCTCTAGGAGTTGCAAGACAGACAGACAAGGCTACATAGAGAAACCTTATTTCAAAAAAATAAAAAATAGGATAAATAAACAAGACACCCCTCCCCCCAAACCTAACAAACAAAATCCCTAATTGACTAAAAAGCTAAAGGAAGTTGGAATTGGGGGTGGAGGGGTTGAGCCATGTTGCTCTATTGGGAAAGAGTGCAAGTTAGAGAAGGTAGGATCTTATCTGGTGACTTTAGGGTAATATAGAGTCCCTTGGGTGGAGTAGATGAGCTCCTGAAGAATGGACCAAGCTTTACAGAGGTATTGTTTGCACATTAGTTATAATGTCGTGTCTGGTATAGCCCTTTGTTCATAGTCCTGATTATCCTGGAACTTTGTCCTTTAAGCTCTCCTGCTCCTATTTCTTTTGAGGACTATGCCTTAACTGCTAGTGTGACCTGGGTTCCCAGTTATGCTTGTCACTGCAGCCTGACCACTTGGGAAAGCTGTGCTAGGGTGCATATGTTGACAGATTTTGCAAAACAAGTGAAAAATGCTGCTTCTCCAATCTGAAAAAAATGAGTCTGCACAGTGCTTATGTTACCTTTGCCTGGGTTCAGTTCCTAGCATCTATGTGGCAGCTCACAACCATTGGCAATCCCAGAGAATCCCATGCTCTGTCCTGAATTTTGTGTGCTCCAGACATGCACATGGCTCACAGACATGCAAACAAAACACGCATACAAAATACATTTTAAAAATAGCATGGGTATGAAAACAAATCTGTATTTTCAAATTGCCTCTCTGAAAGAATCTAGTTCTGCCAAGACAGGAGTAGAACTGTATTTTAAATGGGTCTTGATCAGATAGGTTGGGGGGTACTTTATAAAACAGGCCTTGAGTCCAGTATTGAATGAAAGTTGTACTCAAAAGTACACAGCTGCTAGGTACGAGCCCAATTACTGACGGGTTTGAGTAGTAGAGTGCCAGTTGACAGATTCTGATTGTCTTGGCAACCCTGTCTAATCTTGAACTTGGCCTGGAAAGCACAGGCTTCTTTGAGCATGGCCTTTCCACTGCCTGAGGAACTGAAGTTGGGGATGGGGATAGGCATATGGGCTGAGACCATTATGGAGTAATGGGTATCAGATGGCCTCTTAACTCACCTGGTTAGTGTGGTCAGTTACATCCTTACTGAAGGATATCAAACCACAGTGTGCAGAGAGGAAACCATGTAGGCTTTCTTAGTAATCTCTTAGAGAAGTTAGTTTTTGAAAGCTTAAGTATGAAATGGGTGGAATAACGGGAGTTCAGATCCCCTTGTAAGTAGATTGCCAGGGGACTTGGAAAGGCTTATAAAAAAAAATGTGTGTTCTATCTGTGTGTCCCTTCCTGGACCAATGTGAAGAATGATGAACACGAGTCAACTCACTACAACAGTGTTTAGATAGTGGGACCTACAGAACCCTGTTTGCCGTTAGCAGAACACACCATGCAGAAGATGTTTGGTACTTCAGAAAGAATATAAAGCTCAGTGTGGAGGAACACACTCTAATCCTAATGTGGGATGCCAAAGCAAGAGGACCAAAAGTGTAAAGCCACTTGGGGATAACGAATAATAAGATCCTGTTCAAGCAACTACCACCACAACAAAAATACACAATTATAGCGAATGTGGAAGACATATCCTCGAGCTTAGAATACTACATGAAGAGTTGCAGAAGCTGTATATAATATACCATTTATATGAATTTTAAGCACATTCAAAGTGCTCATATCACTTCCACTGGTTTGGGTTTCCTTATTCTGTACGTGGGATGGAGTTCTAACCTCATAGGGTGGTGGTGGGGACAGTAATAAAATGCATGTGTGACGTTAAGACTAGTGTCTGTCATATAACCATTCCTGATGTATAGTAGAGTTAATATTTTGTCAATTTTCTGTGGATTCAAAAGGCATGACATAAGAGTGTAAACTTATGAAATGGGTTGATGTATGCTATACTGCTCTATATTCTCTCAGTATGAGATGCTAGTGAAATCACAATGGAAACGTTCTTCACTTGTTTTTCTAATTATTGATGCAGATACAACCTAAGATTGTTACAATTTAACAGGATAATATGGTGACTTCTTTCAACTGTTAAAAGTAAATAAAAATAAACAAAAATTAATCATGGCCTCTGACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036:ENSMUST00000216063:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.187
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCTCCCAAACCTGCTCT
R:
ACTTCAGATTCTCTTCCTGTCCT
Band lengths:
345-1063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types