MmuINT0179848 @ mm10
Intron Retention
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:48042029-48044701:-
Coord C1 exon
chr6:48043844-48044701
Coord A exon
chr6:48042156-48043843
Coord C2 exon
chr6:48042029-48042155
Length
1688 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
ATGCAGTTGTTTGGTTTCAGGTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
GTCCAGCAGCTGGACATGGAGGACGATCGCTCGTCACCACTGTCATTCTCCAGTGTCCCACACGAAGAGTCTGTGCGTCAGGCCCCTGCTCGACTCCCTAGAGAAACTGTGTTCCCTTCTTGCATTCTTCCTCCAAAAGAAGTTCCTCCTTTGTCTCCCACTGCCTCCCGGCAAGGTGTCTTGCCCCAGACTGACAGTACTACTAAGCAAGAGACATCCAGCCAGATGTCACATGTTCTTCAGAAAGGACCTTCACTCCTGTATCCTGCCACTTCTGAGCAAGACACACCTCACCAGGTATCCCTTGCTTCCCAGGAAGAAACCCAGTGCTCTCCTTCAGCAGCTGCTCAGGGGATCCCCTTCCTCTCGCACTCCGCCCACCGTCAGGAAGCTCCACTCCACTCTCCTGAGGTTCCTGAGAAAGACTCGCTGACTCTCTCACCCACAGTTCCCGAGACCGACATGGACCCCTTGCTCCAGAGTCCCACTTTGCAAAAGGACACTCCCTTCCATACCTCTTCTGCCGCCCAGAAAGAACAGCCACTGCCCACTGCAGAGATCACTCGATTGGCTGTGTGGGCTGCTGTCCAAGCAGTGGAGAGGAAACTGGAGGCCCAGGCCATGCGACTACTGACTCTGGAGGGCAGGACAGGGACAAATGAGAAGAAGATAGCAGACTGTGAGAGAACGGCTGTGGAGTTCGCAAATCATCTGGAGAGCAAGTGGGTTGTACTGGGGACCTTACTGCAGGAGTATGGGCTGCTGCAGCGGCGCCTGGAGAACATGGAGAATCTGCTGAAAAACAGAAACTTCTGGATCCTGCGGCTGCCCCCAGGCAGCAATGGAGAAGTTCCCAAG
Seq A exon
GTACACACATTTCATTGGGGTCTTCCAGAGGCATCTACAGGGAACGTGGTTTAGGGATTCTGTCAGTTGAAAGAAAGTGAAAGTGGTAGTTGGGAAAGGAAAAACAAGAAACAAGTGTCCCTGCCTTCCAGTATTGCTTCACCGAGATCAGGGCACACCAAAAGCAAATTATCTTTCCTGTTGGTAAAAGCAAAAACTGGCAGAAAAGTCCATTTAGAATGGGGTTAGAAAAGCTCTTCCCAGAGCCTGAGATAGGATGCAGAGAGCTTACACAGAGCAGGTCCTGCCAGTCTGCCCTCCACACTCTGATCTGCATGGTGGTTTCTGACCACTCTGTTACTATTGTGTGGCCGGCATTTGCTACCTGTGGGTTCTTTATTCTTCTACCCTTCCCCACCCTTTCAACCTCTAACACTAGATAGGAGAGAAAAAAAGGATAGAGGGGAGAGAGGGCGATGTTATTGTTAGACTACTTCCTGCTGTTAGGGTTATTGAGTTCCTTGGGGCAAGTTTGATCATCTTCACTATCAGGATAGCTAATTCTTGTTTCTTCTTTACTCAACTTTTTAACAAACTGAGACCAACAACAACCAACACCCTGCCCCTCGGAGCTAGCATTTATATGCCCTATGAAAGATTTCCAGAACTTCAAACTCCACACAGTTGCTGTCACTAGCAAATCACACCCCTGCACGAGGCAAATCATAGTCAGCTGCTGTGGACAGCCTGAAGCAGCCCCATAGTCCACACCTGGGATTAAAATGAAATCACAGTCCGATTTCTGTGGGTTTGTTTAAAAGAAACCAAAATCCTCACTACAATACTGGGAAAAAAGAAAATTATGTCTACACTGAAAATGAACCCTTTTTCTAGCCGTCCGTCCCCTGAAGAGTAGATCACAAGTGCACCCAGTATTCACCTGAGGGGGCATTGTGTTCCATCATTGGATGGGGTAAAGTGCTGGAGGTTTTGTATAGGTTTTATGCAAAAATCTGTGCCGTTTTATACATAAAGACTTCAGCATCTGCCGACTTTGGTATTCTGAGGGTTCTGGAGCCCATTCTTTGCAGGTACTTAGGGCCCTATGGGCAGTGCTTAATGGTTTACCATCAGACTGGATAGGGAGAAGAATATAGTTTAACTCTTAGGTTTTATTCTGTTTAATCTTTTTGTCAATTTACTTATAAATCCTGAATTTCAGTAAAATTGATTTTAGGAAATATCCTTAAGGAGCTAAGAAATGGATTTTAATCTTATTTTCTAGAAGGTTCTAAAGGAACATGAGTGTGGACCAGTTTTCTTTTTATTCCAAACAGACTGAGTCTGTGTATCCGCCAGTTTCTCTTGAAAGCTGTTGTGCATTAGAACTCCAGGCTCTCACTAAAGGCTTACTGATCTCTGAAGTTCCGGGGTGAGGCTTAAGAGTCTGCACTTGCAGCAGGTTTCCTGGTGTTCCTGGTGCTCTGTGTTTTAAAGCTGGGGAAGAGCCCAGGCAAGATGAGTCCTCCACTCCTTGGCCAGGGATGTGGCCAGCAGAATGTTGATAAGGCTCCCTACAACACCCCCCACCACCAGCAAGTGCAGGGGAGGAAGGTTTCCCTCTCTAGTCCTGAATAGAGGGAGTTGGGGTTTGGTCGTCTATGGCATTAACCACTTCGGTCTTTCCTGATGCAGTTGTTTGGTTTCAG
Seq C2 exon
GTTCCTGTCACATTCGATGATGTCGCCGTCCATTTCTCTGAGCAGGAATGGGGAAATCTCTCTGAGTGGCAGAAGGAGCTCTACAAGAATGTAATGAGGGGCAACTATGAGTCTCTGGTCTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477:ENSMUST00000095944:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.669 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=28.5)
A:
NA
C2:
PF0135222=KRAB=PU(95.1=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTCGATTGGCTGTGTGG
R:
CTCAGAGAAATGGACGGCGAC
Band lengths:
342-2030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types