HsaINT0188359 @ hg38
Intron Retention
Gene
ENSG00000196453 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:HGNC:22213]
Coordinates
chr7:149454111-149456037:-
Coord C1 exon
chr7:149455177-149456037
Coord A exon
chr7:149454238-149455176
Coord C2 exon
chr7:149454111-149454237
Length
939 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GAGTTATTGTGTGGTTTCAGGTC
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTTCAGCAGCTGGACATGGAGAACCAACGCTCATCACCTCTGTCGTTCCCCAGTGTTCCACAAGAAGAAACCTTACGTCAGGCCCCTGCTGGACTCCCCCGAGAAACTCTGTTCCAATCCCGCGTTCTTCCTCCCAAAGAAATTCCTTCTTTGTCTCCCACCATTCCCCGTCAAGGCTCCCTGCCCCAAACTTCCAGTGCTCCCAAGCAAGAGACTTCTGGCCGGATGCCACATGTGCTCCAGAAGGGACCCTCACTCCTGTGTTCTGCCGCTTCTGAGCAAGAGACTTCTCTCCAGGGCCCCCTGGCTTCCCAGGAAGGGACCCAGTATCCACCCCCAGCTGCTGCTGAACAAGAAGTCTCCCTTCTCTCCCACTCCCCCCACCACCAGGAAGCCCCCGTTCACTCCCCTGAAGCTCCTGAGAAAGACCCCCTGACCCTTTCCCCAACAGTTCCCGAGACTGACATGGACCCGCTGCTCCAGAGCCCGGTTTCCCAAAAGGACACCCCTTTCCAGATCTCTTCTGCAGTCCAGAAGGAACAGCCGCTCCCCACGGCAGAGATCACCCGCTTGGCTGTGTGGGCTGCCGTCCAAGCAGTGGAGAGGAAGCTGGAGGCCCAGGCCATGAGGCTACTGACCCTGGAAGGCAGGACGGGGACAAATGAAAAGAAGATAGCCGACTGCGAGAAGACAGCCGTGGAGTTCGCGAACCATCTGGAGAGCAAGTGGGTCGTGTTGGGGACCCTGCTGCAGGAGTATGGGCTGCTGCAGAGGCGGCTGGAGAACATGGAGAACCTGCTGAAAAACAGAAATTTCTGGATCCTGCGGCTGCCCCCCGGCAGCAATGGAGAAGTTCCCAAG
Seq A exon
GTAAGCACATCCCAACTGGGGCTTCCCAAGGAAGTGATCTGAATTGGAGTGTGGTTTAGGAATGTAGTGTAATATGAAAGAAAGGGGTGGTTGATAAAGGAAAAAATACAGTGATCCCAGTTGCTAGGACATGCCAAAATCAAATTATTTCTCCTGTTGATGAGAGTATAGGCTAGTACAGAAATGCCCCTGGGATCGGGGATTGTCAGTTTGGAAGGGTGTTCAGCAGAGCTGTCCATGGTGTGAGAGACTACGAAGGCAAAGCGAAGGCCGATGAGAGCCGTGGAGAGGCTTTACCATCAGTCACTGAGGGTGCATTAGCTTCACAATTGCAGCAGAGGAAGGAGCTTGGGTTAAACATCACAAGGATCTGTCCCACTCCACATTTTTATGAGTTCACTTATAAGCCATGTTAGTGCCAGGAAAACTGATTTCAAGATGTTTCCTTTCAAAAGCTAGAGAAGTTAGGTTTCCATATTATTTTCCAGAAGGTTCTGAAAGAGCTTGAGTGTGGACTGGCTTGCTTTCTCTTCTTCAGTGCTGCTGCCCCCTTTCACAGCCATATGTAGGGAGAAAACAGACTCTGTTCTCTAGCCCGGTATGTCTCAAATGTTACTGTGCACATGGATCTCCCCGGGATCTTACTGAATGCAGAAGCTATTTAGTAGGTCTAAGGTGGGGTCTGAGCAAGTTACCTGGTAGCACCATTGCTGCTGGTCCACAGACCATGCTTTAGAGCTGCAAGAATTATATCCTGAAGGGGAGGAAAAGGATCCGACAAGACAGGCCCCTCACTCTTTGGGGCCAGGACAGTGGCCAGACTTCTAGAAAAGTCCTAGGTGAAGGCCCAGAGCCAGGAGTTTGGGCCTTGGGATTGGCCAGCCGTGGGCCTGTCACTGCCTTCCAGCGGGTCTGAGCCGAGTTATTGTGTGGTTTCAG
Seq C2 exon
GTCCCTGTCACATTTGATGATGTTGCTGTGCACTTCTCGGAGCAGGAGTGGGGAAACCTGTCTGAGTGGCAGAAGGAGCTCTACAAGAACGTGATGAGGGGCAACTACGAGTCCCTGGTTTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196453:ENST00000247930:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.681 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=28.4)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGGCTACTGACCCTGGA
R:
ACTCGTAGTTGCCCCTCATCA
Band lengths:
350-1289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains