MmuINT0179879 @ mm10
Intron Retention
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:41643333-41647617:+
Coord C1 exon
chr7:41643333-41643432
Coord A exon
chr7:41643433-41647490
Coord C2 exon
chr7:41647491-41647617
Length
4058 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
ATATTTTTGGAGTGCTTTAGGAT
3' ss Score
2.25
Exon sequences
Seq C1 exon
ATGACTTTCCTGTATTAAGTTGACAAAGATAGCACACATGTCAAGAGAAGGGTCTCAAGACACACCTGGCCTGGGTGGTATAACATTGGTTGCTGTCGAG
Seq A exon
GTATGAAGACACCTGATATTTTGGCCCACCAGAAACCTGTAATGCCAGCTATTACTAAGAGCTAAGGATCCTGACTTTCTAGGCTTATATAGAAACATAATTGTAGAGTTTACAGTCCTAATATCGTAGTCAACATCTTGAATTAGGTTATAGCTCCATATGATGTCACATAAACAGTCTGAGTGCAGGTAGTGTCATATTGGACAACAGTAAACCGTTTCCTGAATATGCAGTGACCATAAATTCAGAATCAAATGTGATAAATCTAAGCTATTTTCTGAGCACCCTTGGTCATGAGCCACGGGGTGTTTATATTATATATACCATCTTACTACAAAATGGTAATTTTGCCTGAAACACCTACATTCAGAGCTGAGATTGTTGCATGCTATGAACAATGGTGTTTTTATTACTCGTTCAGTTTTCTGCTCTTAGAACAGAATGTTTTAATTCTGGAGAACAAGGACCTTTAGTTTATTACTGTTGCTAAGCATCTAAGTATAAAATTAGTGTGTCTTTTCCTTGTGTAAGGATATTTGATTCGATTTTTTTTAATTTTAAATTATGTGTGGTTTGGTAGGTTTGTGCAGGTTACAGTGTCCATGTACAGGTCATAGGACAATTTGCAGGAAACCATTATTCCCTTCTACCATGTGGGGGTACCCAATAGTCATGATGTAAAGGGAAAGAATGAGACAGAGTGACTTTTAATAGTTCTCTCTAACCTGTGTGAAGTTCCTGAATGAATGTGGTAGGATGAATGTATCTAGGTAGGTAGGGCAGAGGTTGGAAACAGTTTTACATGTAAAAAGGAAGGACAGAGGAAGAGGGGTGAAAGGGGAGGGTAGTAGCTGAATTGGTAGGTAGAGGGGAGGGAGACTCAACAGTTAAGGATGTTTGAGTTTGTGCTTGAAAATGTCGAAAAAAAGGATTTTCAAGAGTATCATTAAGGGCTGGATTTAAGGAAGATGAGCTAGTGAAGAAGCTTTATTAAGAAAACACTATTTCTCTTAAAGCTTTCCGTGAAAGCCTAGATAGGAGGAAACTAGGACTCTAGACCAACAAAGGAGATCTACTTTCAGCATGGTGTTTAATGTGTAATGCTTCAGGCACGTATACAGTAGAACTGTGTTCTTTCTTTTAGAGTGTTGGTATCAAGTTTAGGCCCCATCGCTATGATGGTGTCACAGGGTGAGGGAGAAGGAATGGATGGCATGAGACCCATCCTGGATCCTAAGAGTTCACTGTCCCTTCAAAGAGCAGTCCTAGATTAGGGCAGTCCTCCTGTTTAGCCCTAAGGGATTGCATACAGTGCTTAGGCTGGGGTACTCGACAAAGAAGAGAAGATTTCTAGCTCACAAAAGTGAAACCCAGTTTTATAGAGGAGCCTCTTGTCGTATATATGTGGCCTCAAATTCCTAAAAGTACATAGAATCTTTTTAGTTATTTTATTCTGATTTGACATTTCTCAATGGAAATGCAAACATCATTCCATTATGATTGGGCCTAAAATAAACTGTTTTGGAGCTTCTAAATATTTTTTCTGGGTGTGGTCATATAGGGTATACTCAAATTCCATTTAAGAAGATGTGACATGTGAAAGTTTCTATGAGGGAGGCCAGTTAGACTTCCTCTTCCCTGCCTCAGGACCCCAACCTAAGGAATGTCACAGAGTCCTTGGCAAAATTACACATTCAGCTTCCTCCCTCCAGATAAGAATCAGCTTAGCAAGCACCTGGGATTTTTTTTTAATTTATATATACATACATATATATGTGTATACACACACACATATGTATGTATATATAAATGGATATTTTCTTTGTTTACATTTGAAATGTTTTCTCCTTCCCAGGTTTCCTCTTCAGAAACCCCATCTCATCACCCCTCCCACTGCCTCTGTGAGGGAGCCCCCCCCCCCCCGCCATTCCTATCTTCCCACTCTGGCATTCCCCTACACTGGGGCTTCGAACAGCCTCAGGCCCAAGGCCCTCTCCTTCCACTGATGTCCAACAAGGCCATGCTCTGCCACATGTGAGGCTGGAGCTATGGGTCCCTCCATGTGTACTCTTTGGTTGGTGGTCCAGTCCCTGGGAGCTCGGGGGGGGGGGGGGGAGTGGGGATATCTAGCCAGTTGACACTGTTGCACCTTCCATGGGGCTACAAACCCCCTCAGCTCCTTCAGTCCCTTCTCCAACTCCTCCATCTGGGACCCTGAGCTCAGTCCAATGGTTGGCTGCACACATCCACCTCTGTATTTGTCAGGCTCTGGCAGAGCCTCTCAGGAGACAGCCCTATCAGACTCCCTTCAACAAGCACTTCCCAGCATCCACAATAGCAACTGTATATCAGATGGCTAATATCCACTTATCAGTAAGTGTATACCATGTCTGTTTTTTTGTGACTGAGTTACCTCACTCAGGATGATAATTTCAAGTTCCATCAATTTCCCTGTGAATTTCATGAAGTCATTATTTTTAATAGTTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGTTTTTGGCTATTATAAATATGGCTGGTATGAACATAGTGGAGCTTGTGTCCTTATTACATGTTTGAGCATCTTCTGGGTATATGCCCAGGAGTGGTATAGCTGTGTCCTCAGGTAGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACCAGTTTATAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGACTAAGGATGTTGAACATTTTTTTACGTGCTCCTCTGCCATACGTGGCTCCTCAGTTGAGAATTCTCTGTTTAGCTCCGTTCCCCATTTTTAAATAGGGTTATTTGGTCTCTGGAATCTAACATTTTGAGTTCTTTGTATATATTGGATATTAGCTCTCTATTGGATGTAGGGTTGGTAAATATCTTTTCCCAATCTGTTGGTTGTTGTTTTGTCCTATTGACAGTATCCTTTAACTTACAGAAGCTTTGTAATTTTATGAGGTCCCATTTGTTGATTCTTGGTCTTAGAGCATAAACCATTGTTGTTCTGTTCATGAAATTTCCCCTGGGTCCATGTGTTCAAGGATTTGCCCCACTTTCTCTTCTATTAGATTTAGTGTATCTGGTTTTAAAGCACCTGGGATTTATGGAATGTCTCTTCATGCAAATGAGGTATTGCCTGAACCTTAAGTCACAATAAAACTTCACCCTAAGATTTATATATAGCCTTGATTTACCCTGAATAAAGGGTATGCACATAAGCCATTACATCGAATATCATCTGAGAGATGATAAGAGGAGAGCTGTAACATTAAAATCCTCAGAGGAGGACCAAGATTCTGTAGACCCTACCCATTCTCAGCTCTTTATCCTTCCAGCCTGGTGTATAGTGGCTTCTGGACACACTAAGGGAGGAAGCAGAACATGGAATCACAAGGAGGCGGACCTTCTAAATACTATAGTTTGTATTAGACTGAGAAGGATAACAGGAATTCAGAAAATGCTACAATACTTGCATAAATCATTTAGGCTGAGTGAATTAATCTTCTAGTTTATGTGCATGAAATCTGTGTTAGAACTTATTATTCCCTTATGACGTCAAAGCTTAAGCTTTTTTATTAGGAATTTCTAAGTACCAGCAACAATGCTCTATAGATGATAGAATGATAGATTTTTTTTTTTAAAATGGAAGGACTAGAGATCCATCTTAAAGAGAAAAATTGGTGTAGCCCAGCAGTATATCCTACTCCCTGTGCCCAGGTATAAGAGGAATCTCAACACTATCTGTAGCCTATCTGTACACGAGATAAAATGTTTGGAGACTACAGAATTCATCAATTTCTTGTCAGTTGAATTTAGATGTATAGTGCCTTACATCTCACAATTTCTCTTGCACATATTTTTGGAGTGCTTTAG
Seq C2 exon
GATTTAGTTGTCTTTGAGGATGTGGCTGTGAACTTCACCGAGGAAGAGTGGGCTTTGCTGGATTCTTCTCAGAAGCATCTGTACAGAGATGTAATGCTGGAAATCTACAATAACCTTGCTTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165:ENSMUST00000098508:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types