MmuEX0053615 @ mm10
Exon Skipping
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:41633577-41647617:+
Coord C1 exon
chr7:41633577-41633694
Coord A exon
chr7:41645288-41645805
Coord C2 exon
chr7:41647483-41647617
Length
518 bp
Sequences
Splice sites
3' ss Seq
AAATGTTTTCTCCTTCCCAGGTT
3' ss Score
9.04
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAGCTCTAAGACTGAGGTAGTCGCGTTGGAGACGTTGCTCTGTACGAAGTGCACCGCTGTGACAAATTATGAGGCAAATTATGTGAAGAGAGCGGGTGAGCCTGCAAGCCGCGCTATG
Seq A exon
GTTTCCTCTTCAGAAACCCCATCTCATCACCCCTCCCACTGCCTCTGTGAGGGAGCCCCCCCCCCCCCGCCATTCCTATCTTCCCACTCTGGCATTCCCCTACACTGGGGCTTCGAACAGCCTCAGGCCCAAGGCCCTCTCCTTCCACTGATGTCCAACAAGGCCATGCTCTGCCACATGTGAGGCTGGAGCTATGGGTCCCTCCATGTGTACTCTTTGGTTGGTGGTCCAGTCCCTGGGAGCTCGGGGGGGGGGGGGGGAGTGGGGATATCTAGCCAGTTGACACTGTTGCACCTTCCATGGGGCTACAAACCCCCTCAGCTCCTTCAGTCCCTTCTCCAACTCCTCCATCTGGGACCCTGAGCTCAGTCCAATGGTTGGCTGCACACATCCACCTCTGTATTTGTCAGGCTCTGGCAGAGCCTCTCAGGAGACAGCCCTATCAGACTCCCTTCAACAAGCACTTCCCAGCATCCACAATAGCAACTGTATATCAGATGGCTAATATCCACTTATCA
Seq C2 exon
TGCTTTAGGATTTAGTTGTCTTTGAGGATGTGGCTGTGAACTTCACCGAGGAAGAGTGGGCTTTGCTGGATTCTTCTCAGAAGCATCTGTACAGAGATGTAATGCTGGAAATCTACAATAACCTTGCTTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.267 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000098508fB4713
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTAGTCGCGTTGGAGA
R:
CGACACAAGCAAGGTTATTGT
Band lengths:
242-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types