MmuEX0053617 @ mm10
Exon Skipping
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:41633577-41647617:+
Coord C1 exon
chr7:41633577-41633694
Coord A exon
chr7:41643333-41643432
Coord C2 exon
chr7:41647483-41647617
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTTTCTCTTCTTAGATG
3' ss Score
9.42
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AAGCTCTAAGACTGAGGTAGTCGCGTTGGAGACGTTGCTCTGTACGAAGTGCACCGCTGTGACAAATTATGAGGCAAATTATGTGAAGAGAGCGGGTGAGCCTGCAAGCCGCGCTATG
Seq A exon
ATGACTTTCCTGTATTAAGTTGACAAAGATAGCACACATGTCAAGAGAAGGGTCTCAAGACACACCTGGCCTGGGTGGTATAACATTGGTTGCTGTCGAG
Seq C2 exon
TGCTTTAGGATTTAGTTGTCTTTGAGGATGTGGCTGTGAACTTCACCGAGGAAGAGTGGGCTTTGCTGGATTCTTCTCAGAAGCATCTGTACAGAGATGTAATGCTGGAAATCTACAATAACCTTGCTTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.426 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTAGTCGCGTTGGAGA
R:
CGACACAAGCAAGGTTATTGT
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types