MmuALTA0020752-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:41633203-41647548:+
Coord C1 exon
chr7:41633203-41633694
Coord A exon
chr7:41647483-41647490
Coord C2 exon
chr7:41647491-41647548
Length
8 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TCTTGCACATATTTTTGGAGTGC
3' ss Score
-13.4
Exon sequences
Seq C1 exon
GTTCGCTAAAGGGTGCAGACCTGTTCCAGATCCAGGGAGATTTGCATTTAAGCAGAATTGTGTAGTGGGCAGTGCACATGAGCGACCCTGTGCTCTGAAGCAAGGAGTGCCAACTAAGTGCAAGAAGACAGCCGAGCCAGTTCTGGGAGGAAGAAACAGGTTCTGTGTAAATGTAGATCTCACTGGAGCTCATTCAGGTCCGCACATAGGGCCGAAGGCAGGGCTGGGAGTGACTAGCAGTACTGGTCCCTTCAGTCATGTGCAGCTTAAGGATGCTATCACTCAAACATTGCTAGCCAATCAGAGCTTCCAAGTAGGCAGTCCAATCGAGTGCCAGCGGGAGGCGGGATTTCTTGGCCGCCATGCCACCTTCCAAGCTCTAAGACTGAGGTAGTCGCGTTGGAGACGTTGCTCTGTACGAAGTGCACCGCTGTGACAAATTATGAGGCAAATTATGTGAAGAGAGCGGGTGAGCCTGCAAGCCGCGCTATG
Seq A exon
TGCTTTAG
Seq C2 exon
GATTTAGTTGTCTTTGAGGATGTGGCTGTGAACTTCACCGAGGAAGAGTGGGCTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165-0-6,0-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACCGCTGTGACAAATT
R:
CACAGCCACATCCTCAAAGACA
Band lengths:
101-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types