MmuALTD0016242-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:41634680-41643432:+
Coord C1 exon
chr7:41634680-41634710
Coord A exon
chr7:41634711-41634899
Coord C2 exon
chr7:41643333-41643432
Length
189 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGC
5' ss Score
5.75
3' ss Seq
TTTGATTTTTCTCTTCTTAGATG
3' ss Score
9.42
Exon sequences
Seq C1 exon
AGGCCTGAAGAGGATGTCGGAGGCCTTGAAG
Seq A exon
GTAATGAATGTTAAATGCTGTCATCAGCCACTGAAGTGAGTGCTGGGAACCAAACTCAGGTTTTCCAAAATAGCACACTCAACTGCTGAGTCATCTCTCCAGCCCTCCGTGTACTTCAGGGGACACTGAGAGACAAGTGTAAAGGTCTCTGGAGAGAGGTGTCCTTCATATCCTCGTCTGTCTGAATCC
Seq C2 exon
ATGACTTTCCTGTATTAAGTTGACAAAGATAGCACACATGTCAAGAGAAGGGTCTCAAGACACACCTGGCCTGGGTGGTATAACATTGGTTGCTGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165-2-3,3-3,4-3,5-3-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTGAAGAGGATGTCGG
R:
TCGACAGCAACCAATGTTATACCA
Band lengths:
130-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types