MmuINT0179878 @ mm10
Intron Retention
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:41634680-41643432:+
Coord C1 exon
chr7:41634680-41634710
Coord A exon
chr7:41634711-41643332
Coord C2 exon
chr7:41643333-41643432
Length
8622 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTTGATTTTTCTCTTCTTAGATG
3' ss Score
9.42
Exon sequences
Seq C1 exon
AGGCCTGAAGAGGATGTCGGAGGCCTTGAAG
Seq A exon
GTAATGAATGTTAAATGCTGTCATCAGCCACTGAAGTGAGTGCTGGGAACCAAACTCAGGTTTTCCAAAATAGCACACTCAACTGCTGAGTCATCTCTCCAGCCCTCCGTGTACTTCAGGGGACACTGAGAGACAAGTGTAAAGGTCTCTGGAGAGAGGTGTCCTTCATATCCTCGTCTGTCTGAATCCGTAAGCCCTAGTACTGAGCTTTTCTGTCCTACACAGTTTTCTCTAGGTGGGGCTGAATGGAACTACAGGAAAGTCTGAGATCCTAGCTTGAGTCCCCAAAACCCTCTGTGGCAGTTCCTCTTAACTTCTCTAATGCCAGCCTTTAATACAGTTCCTCATGTTCTTGTGACTCACGACCATAAAATTATTTTTTCATTAATTCATTAATTCATTCATTAAATTTACATTCTGATCAAAACCTCCCTCCCCCTCTCCACCCAATTCCATCTTTACAAATCCCTCCCCACGTTGCCTCCTCTCTTCCTGGGGCATCCAGTCCCAGCAGAACTAAGCACGTCCTTTCCCACTGAGGCCCAACCAGGCAGTTCAGTTAGGGGAAGGAGATCCAGGGGCAGGCAACTAAGTAAAAGACAGCCCCCACTCTAACTGCTAGGGAACTCAGATCAAGACCAAGCTGCTCATCTGCTCCAAATGTGTAGGGGATATAGGTCCAGCCCCTACATGCTTTTTGGTTGGTGGTTCAGTCTCTGTGGGCCCCCATGGTCCCAGGTCTGTTGGTTCTGTAGGTCTTCTTGTGTTATCCTTGATCCTTCTTTCTTGCTCAATCCTATCCCCTACTCTTCCAAGCTCCTCCTGATGTTTGGCTATGGGTGTCTGCATCTGTTTAAATCTGCATGTGACTCCTGTCTACAAGCATAGCTGAGCATTCACTAATAGTGTCAGGGTTGTGTCCCATTTGGGTTGGGTCTCAAGTTGGGGTAGTCATTGGTTCCCTCAGACTCGGCTCCATTTTTATCCCTGCATCTTTTGTAGGGAGAACAAACTGGGTTGAAGATTTTGTCGATGGGGTGATGTCCACCTCCCTCCACTAGAAGTCCTGCCTGGCCACACTAGGTGACCACTTTAATCTCCATATCCTTCACTGGTAGAAAAGAACCTCAGCTAGGGTCACCCCCATAGACTCCCTGAAGCCTCCTCCATCCATGTCTATAGTTAGTCCCAGAGATGTCTTAGAACCATTTCCATTTCTTTGCCCAGCACTCTCCTGCCTACCTCCAGCCATACCTGATCCCCATCTCCACTGCTCTCTTCACCTCCTTTCCCACCCAGTTCCCTCTTTTTTATCCACCTCCAGTGACTATTTTGTTTCTTCTTCATGCATTCCTTCTTGGGCATGCCCTGTTAGTTTCTTTGGTTTTGTGGATTGTAGCATAGGTATCCTGTACTTTACAGTTAATGTCCAATTAATTATAAGTGAGTACATGTCTTTCTGGGTCTGGGTTACCTCACTCAGAATAATATTTTTCAAGTTTCATCCATTGCCTGCAGTTTTCATGATGCTCTTGCTTTTAGTAGCTGAATAGTAGATGTACTACATTTTTTTAAAATCCAATCTTCAGTTGAGGGGCATCTAGATTAATAAAGCTGTTATGAACACGGTTAAGCAAGGATCCTTGTGGTATAATGGAGCATCTTTTGGGTATATGCCCAGGAGTAGGATAGCCAGGTCTTGAGGTAGAAGTATTCCCAGTTTTCTGAGAAACCACCAAATTGATTTCCAGTGGTAGTACAAGTCTGTACTCCAACCAGCAATGAAGGCATGTTCTCCTTGCTACACATCCACACCAGCAGGTGCTGACACTTCAGTTTTTGGTCTTAGCCATTCTGACTGCTTATAAGATGGAATCTCGGAGTCTTTGATTTGCTTTTTTTGATAACTAAGGACATTGAACATTTGTTTAAGTGTTTCATGGCCATTCAAGATTCCTCTGTTGAGAATTCTCTATTGAGTTCTGTACCTCAATTTTAATTGGGTTATTTGGTTTGGTGGTATCTAATTTCTTGAGTATATATATATATATATATATATATATATATATTTTGAATATTAGGCCTCTATTGGATGTAGGATTAGTAAAGATATTTTCCCATAATGTAGGCTTCTATTTTGTCCTATTGATGGTATCTTTAGCCTTACAAAAACTGTCCAGTTTCATGAGGTCCCACTTATTAATTGTTGATCTTAGTACCTGAGCTATTAGTGCTCTGTTCAGGAATTTGTCTACTGTATTCAAGGCAGTTCCCCACTTTCTCTTCTATTAGATTTTTAGTGTGTTTGATTTTATGTTGAAGTCTTTGATCCACTTGGAGTTGAGTTTTTTGCAGGATGATAGCTATGCATTGTCTTAATTGGTGTTTCCATTGCTACGAAGAGACATCATGACCAAGGCAACTCTCATAAAAGGAAACATTTTATTGGGGCTGACTTACAGTTTCTGAAGTTCCATCCATTATCATCATGGTAGGAAGTATGGTAGCATGCAGGTAGACATGATGCAGGAGGAGCCTGGAGTTTATCTTGATTTAAGACTCTCTTCTGTAGGAAGCCTGGAGGAGACTCTCTCTCCACACTGTGTGGAACTTGGGCATAGAGACCTCAGACCCCATTCCCACAGTGAAACACTTCCTGTATAAGGGCATACTTCTTTCAATAAGGCCAAAATCCTAATAGTGCCACTTACCATGGGCCAAGCATATTCAAATCACCACTTGAGGCTATTTGCATTCTTTTACAAGCAGACATCTAGTTAAATCAGGACCATTTGTTGAAGATGCTTTCATTTTTCCAATGTAAGGTTTTGGCTCCTTTGTCAACTATCAAGCATTCATAGTTCATAAGTATATAGGTTTATTTTTGGGTCTTCAATTCTATCAATCAGCCTGTCTGTGTTTATGTGAATACCATGCATTTTAATTAGTATTGCTCTGTAGTGTAGTTTGAAATCAGGGATGGTGATGCCTTCAGAAATTCTCTTATTGTACAGGATTGTTTTAGGTATCCTGGGGTTTTGTTTTTCCATATGAAGTTGAGAATTGCATTTTTAAGGTCTGTAAAAAAATTGTATTGGAATTTTGATGGGAATTGCATAGAATATGTAGATTGCTTTTGGTGAGATGGCTATTTTTACTATGTTAATTCTACAGATCCATGAACTTGGGAGATCTTTCCATCTTTGGATGTCTTCCTTAATTTCTATCTTCAGAGACTTGAAGTTCTTCTCATATAGATCTTTCACTTGCTTGGTTAGAGTTACACCAAGGTATTTTATATTATTTGTGGCTATTGTAAAGGGTGTTATTTCCATAATTTCTTTTCTCATTTGTATAAAGAAGGGCTACTGATTTTGAGTTAATTTTGTATTGAACCACTTTGCTAAATGTGTTTATCACCTGAAGGATTTCTCTGGTAGAAATTTTGGGATCACTTATATACTATCATATCATCTGCAAAAAGCAATATTTTCACTTCTTCCTTTCCGGTTTGTAACCCTTATCTCCTTTACTTGTTTTATTGCTCCAGGTATAACTTCTAGTTCTATGATGAATGGATAGGGAGAGAGTGGACAGCCTTGTCTTGACCCTCATCTAAGGCGAATTGCTCTGTTTCTCTTCCTTTAATTTGATGTTGGCTGTTGGTTTGCATAAATTGCTTTTGTTATGTTTAGGTATGCACTTTGTATCCCTGATTTCTCCAAGACTTTTATTTTTTTACTTTTAAATTATTCGATATTTTCTTTATTTACGTTTCAAATGTTATCCCCTTTCCTGGTTTCTGCTCCGAAAAACCCCCAACCTATCCCCCTTCCCCCTGTTCACCAACCCACCCACTCCCGCTTCCTGGCCATGGCATTCCCCTACACTGGGGCATAGAGTCTTCACAGGACCAAGGGCTTCTTCTCCCATTGATGTCCAACAAGGCCATCCTGTGCTACATATGCAGCTGGAGCCATAGATCTCTCCATGTGTACTCTGGTTGGTGGTTTAATCCCTGGGAGCTCTGGGGGTACTGGTTAGTTCATACTGTTGTTCCTTCTATGGGGCTGCAAGCTCCTTTAGCTCCTTTAGTCCTTTCTCTAGCTCCTTCATTGGGGAACTTGTGTTCAGTCCAATGGTTGGCTGAGAACATCCACCTTTGTATTTGTCAGGCACTGGCAGAGCCTCTCAGGAGACAGCTATATCAGGCTTCTGTCAGTAAGCATTTGTTGGCATCCACAATAGTGTCTGGGTTTGGTGACTGTATATGGGATTTATCCCCAGATGGTGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCACACTTTGTCTCGGCATCTCCTCACATGAGTATTTTGTTCCCCTTCTAAGAAGGACTGAAGTACCCATACTTTGGTCTTCCTTCTTCTTCAGCTTCATGTGATCTGTGAATTGTATTTGGGTATTCTGAGCTTCTGGGCTAATATCTATCTACTTATCAGTGAGTGCATACCATGTGTGTTCTTTTGTGACTGGGTTACCTCACTTAGGATGATATTTTCTAGTTCCATCCATTTGGCTAAGAATTTTATGAATTATTGTTTTTAATAGCTGAGTAGTATTCCATTGTATAAATGTGTACTGGCTGGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACAGAGAAAGGAGTTTCAGTTGGGGAAATGCCGCCACAAGATCCATCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGAGGAGGCCCCATTGTGGGTGGTGCCATCTCTGGGCTGGTTGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAGGCAAGCCAGTAAGTAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGCATCCTTTGGTGATAACAGCAGTGTGGAAATGTAAGCGGAATAAACCCTTTTGTCTCCAACTTGCTTCTTGGTCATGATGTTTTATCCAGGAATAGAAACCCTGACTAAGACAAAATGTATCACATTTTCGGTATCTATTCCTCTCTTGAGGGACATATGGGGTCTTTACAGCTTCTGGCTATTATAAATAATGCTGCTATGAACAAAGTGGAGCATGTGTCCTTTTTATATGTTTCTCCAAGAGTTTTAGATGTAGGTGTTTTAGATTTTGTCAAAGGCTTTTTCAACATCTAATGAGATAGTCATGTAACTTTTCTTTCACTTTCTTTTTATAGTGGATTACATTGATCAATTTTCATATATTAAACTATACCTGTATCCCTGGAATGAAGCCGACTTGATTATGGTGGATGAAGTTTTTTATGTGTTCTTAGAATCAGTTTGCCACTATTGAGTACATTTCCATCAGTGTTTATAGTAGAAATTGATCTAAAATCATCTTTCTTTGTTGATTTTTTTATGTTGTTTTTCAGGGTGACTGTGGCCTCATAGAATGAGTTTGGCAAAAATGTTCCTTTTCTTTCTATTTTATGGAATAGTTTGAGGAGTATTGGTATTAACACTCTAGCGAAAGTCTGGTAGAATTCTGCACTAAAACTATCTGCCCCTAGACTTTTTTTGGTTGTGAGACTTTTAATATCTACTTCTATTTTCTTAGGGGTAATAGGACTGTTTAGATAGCTTATCTGATCTTGATTTAACATTGGTGTTATCTGTCTAGAAAACCATTCATTTATTTTAGATTTTCTTTGAGAACTTGTTTGGTGGTTCTAAAAGGGAAATAAATGCAGGTACTCTTATTCTCCTGACCAAAGACCTGTCTTCCTTTTATGATATCTATCTAGAAAATCACCCATTTCATTCAGATTTACCAAGTTTGTGGAGTATAGGTTTTCAAAGTAAGACTGAATGATTCTTTGGATTTCCTCGGTGTCTGTTGTTCTGTCTCCCTTTTCATTTCTGCTTTTGTGAATTGGAGACTGTCTGCCTTTTAGTTAGTTTGGCTAAGGGTTTGTCTATCTTGTTGATTTTCTTAAAGAACCATCTCTGCATTGTTCTTTTGTTTCTAAATCATTCATCTTAGCCCTGTGTTTGATTATTTCCATATATATATATATATATATATATATATTTATATATATACACACACACACACTTATATATATTTCTCACATATATATATATATATATATATATATATATACATTTCTTTTTATATTTTGATCTCAGCACCCTCCATCCCTCCCATGATTACCTATTCCCTTTTCCCTCAGAGAATGAGCACCCCCTCTTGGATACTACACCACCCTGGGACATGTAGGCCCAGCAGGACTAGGACATCTCCCACTGAGGTTCAGATAGGTAATCCAGAAAGGGGGAGGGGATCCAGTGGCAGACAACAGAGATAACCCTGCTTCAATTGTTAGGGGACCCAGATGTTCTTGGTGTAGCTGGTCTCAGATGGGCAGCCTGGGCAGGACAATGGATCTCAGGGGATAGTGCACTTTTCAGCCAACTCAACATGCTGGGGCTGGGGGTGGTGCTACAGTCAGCTTCAGTTTCTATTGTGGCTTTGACCAACACCTCAAAAGGAACTTAAGTCACAAAGAGACTTGTTTCCTTTTCTCTCTTTCCCAGGTGTATTTGATGTCCCAAGACTCCCTAATAGGTACCCGTTTCACCTATCTAAATATCTACTTCTCTTGATTTCCTTATCACAGTTGCAAGAGCTCTGGAGTCATTTCTGTCCAGGCCTTCTTCCTTTGCTGCCTATTTCCCTCTCACTCTCTGATCCTCTTGTGCTTGTGGTAATTAACTGATAGCCCTACAAGCTAAGGAGGTTCTCTGGCCCTATGTAAGGGAGAAGAACTACTTTTCTTCTTTCTGTTGTCTTCCTTTACTTTGTAAGAGTTCTAATTTTCCTTCCTCCTCTCCATTTCTTTCCTGCAAGACTGATGCTGAGACTTATCCTCAACCTGCCCAAATTTTGTCAGTATCACGAATGAAGAGTGGCTGACACTGTTTATCTGCAGTATTCTTCCCAGCCACAGATCCACCTCTGAGTAGTTAGTCATCCTTCAGACTCTCCCAAATGGAATTCCTGAATCAAAAGAATTCATCAGGTTGTCTTTGACAACTTATAGGAATTAATAAAAGTAAAATTTCTGTTCAGAAAATACCCCAACAAAACATAATTTAACAAATCCAACTCCAAATGGTTTTACAAATAGACAGTGCCCTCTTGAAGTTTAATTACAGATAGCCTCTAACCCCAGGGCCACCAACTTGATGATCTATCATAGGACAGGGAGTCCCACCCCAATCCAGCCCCACCCCAGTTCAGTAAGAAGCCAAACTGATTTCATTGCCCATTAATACCACAGCTCTGCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTCTCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCAATAACTAAGAAGGCTGGAAATATTAGAAAGCCCAACTACCAAATGTGGTGGTACACACCTTTAATCCCAGGACTCAAGATGCAAAGGCAGACAGATATCTGAGTTCAAGGTCAGCTGCTCTACAAAGTAATTCTAAGACATCCAGGGCTGTTACACAGAGGAATCCTGTTTTGGGGGAGGAAAAGAAAAGAAAAGAGGAGAAAAGAAAAGGAAAGAAAAGTCAAGTCTATACCATCTAAGGTAACTGGGCCCTAGCAGATAGAACTATGAACAGGGTGGGCAATACCCAGTCCTCTGATGCCTGGATATCAAGGCAGTTTTACTCTACTCACACATTTACAAAGCTCTGCCTCCCCAACTTAAAGCATTTCTGTGACCCTGGTCATGTAACCTAAAATCCTGCTCCTTCACCTTATCACAAAGCATAAGTTACGTTCTGTGTAAACCTGCTACTGTCTTTTGTAAGACTTTTCCCTTTCCCCCTCAAATAAAAAATCTTTAAGAATGCACAACTTGATGGATGTGGTGGCTCACATCTTTAGCAACAGCACTCAGCGGGTAAAAGTAGGTAGATCTCTATGAGTTTGAGACCAACCTGGCACATAGTGAGTTCCAAGACACTCAGTTGTACATAGTAAGACCCTGACTTTTAAATTTTTTTAAAATTTTTTTATTTTTATTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCTATACCCTCCCACCCCCCTGCTCCCCATCCCACCCACTCCCGCTTCCTGGCCCTGGCGTTCCCCTGGACTGGGGCATGTGATCTTCGCAAGAGCAAGGCTAGAATCTCGAAGCATGATCTGAAGCAGAGACCAGAGAGGAACACTGCTAATTATCTTGCTTCTCATCCTTACTCAGCCTGCTTTCTTATACAACTCAGAAGTATCTGCCCAGGACTGGTACTAATCACAAATGAACTGAACCCTCAAATGCCAATCATTAATCTGTAAAATGCCCCCACAGAGTTGTCTACAGACCAATCTGATGGTGACATTTTCTCCTTTGATTTTTCTCTTCTTAG
Seq C2 exon
ATGACTTTCCTGTATTAAGTTGACAAAGATAGCACACATGTCAAGAGAAGGGTCTCAAGACACACCTGGCCTGGGTGGTATAACATTGGTTGCTGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165:ENSMUST00000098508:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types