MmuINT0179881 @ mm9
Intron Retention
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:48903189-48906902:+
Coord C1 exon
chr7:48903189-48903249
Coord A exon
chr7:48903250-48903562
Coord C2 exon
chr7:48903563-48906902
Length
313 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTGTTTCATTATCCTAACAGAAT
3' ss Score
8.16
Exon sequences
Seq C1 exon
GAAACAAATGGGAAGACCAAAGCATGGAAGATGAGCACACAAATCCTAGGAGAAGTCAAAG
Seq A exon
GTAAGGTCCATATAGAGGCAGAGGTTTCATGAGTTAATCTTAATATATTGTGAAATTTAAAGAAAAGGAAATATGCAGAGATTAAACTTAGTCATCTTTAGATCATTTGGAAGCAATTCTAAGAAATGTATTTTAAGACAACTCTGTGGGAACCACATCAGAAAATCACAAGTCCCCTTGATTGCAAACCATTCACCTGTACCAGAATGTTTAAATTTTCTTTTATTTTGGAGTAGTCCATATCCAAGACTGACTAATAATCAAAAAGTGAGCAAAAGCACTATTGCTAATGTGTGTTTCATTATCCTAACAG
Seq C2 exon
AATATGTAAGTTTGAGAGACTCTATGAGAGTACTGAAGGTGATCAATCTGGAGAAATCTTCACCAAGACACCAACTCTGACAAACATCTTCCCTGGTCTAAAATCTGAGCTTGATGAAAGTGGCGGGATGCAATATAAATGTGAACAGACTTGGAAAACAGACCTGAATTCTGTTACAAGTATTCCAATATATACACAAAATCTCAGTATGAGTAGGTCTTATAACGTTTGTGCCACATCCTTTGGTTTTCCCAGCTCATTTGGAAGATATCAAGAAACTCCTGTTGGAGAACAGCACTGTGAACAGAAGGTAAAAAACTGTCCTTCAGCTAAATCATTTTACATCCATGAAATGAATGACAATGCAGACATCGATAATGAACACAAACCATTTGGTAGAGCTCCGAGCTCTTTTGGTTCCTGTGAAAGTCGTGGAAGAATTAATACAAGGAAAAAGCCCTATGAATGTAGGCTGTGTAGTAAATCTTTCATGTATCCTTCTTTACTTCAAAAACATGAAATAACTCATTCCAATGAAAAACCCTACGGGTGCCTACAGTGTGGTAAAGCTTTCAGAAATTTCAGTTCTCTTCAAAAACATAAAATAGCTCATACTGAGGAAAAGCCTTATAAATGTCATTATTGTAATAAAGTGTTCATCTGTCAGGGATCACTTCAGTCACATATAAGAGTTCACACTGGGGAAAAGCCTTACGAATGTAAACAGTGTGGGAAAGCCTTTAGAGTTAACAGTTCCTTTTGGCGCCATAAAAAAGTTCATACTGGGGAAAAGCCCTATGAATGTAAACAATGTGGTAAGTCCTTTATTTATCCTTCTCTACTTCAAACACATGAAAGAACTCACAGTGCAGAAAAGCCCTATAGCTGTAAACAATGTGGTAAGGCCTTTAAATCTCACAGTTCCCTTCGAGTCCACGAAAGAAACCATACTGGGAAAAAGCCCTATGAATGTAAACAATGTGGCAGGTCCTTTATTTATCCCTGCTTACTCCAGATTCATGAACGAACTCACAGTGGTGTGAAACCCTACGGATGTAAACAGTGTGGGAAAGCGTTCAGGCGCCTCAGTGACCTTCGAGTCCATGAAAGAACTCATACCGGGGAAAAACCTTATGAATGTAAGCAGTGCGCTAAATCTTTTATTAATCGGTATTTGCTTAAAATGCATCAAAAGTCTCATACTGGCGAGAAACCCTATAAGTGTAAGATTTGCAGCAAAGCCTTCGTTTATCCCTCCTTACTTAAATTGCATGAGAGATCTCACACTGGGGAAAAGCCCTATCCATGTAAACAATGTGATAAAGCCTTCATTTTTCCCTCCTTACTTAAACTGCATGAAAGAACTCACACTGGGGAAAAACCCTATGCCTGTAAACAGTGTGGTGAAGCCTTCAAAAGTTACAACTCCCTTCAGAGACATAAAAGAATTCATACTGACGTAAAGGCTTATGTATGTAAACACTGTAGCAAAGCCTTCATATGCCAGAGGTCCCTTCAGTTACATAATAGAACTCATACCGGAGAAAAACCATATAAATGTGAACAGTGTGGTAACTCCTTCAGATATCACAATTCCCTTCAAAGACATAAAATAATTCACACTGGGAAAAACCTCTATGAATGTAAACAGTGTGACAGGTCCTTCATTTATCCATATTTACTCCAAATACATGATAGAACGCACTCTGGGGGAAAACCATATGAATGTACACAGTGTGGTAAGTCCTATATTTATCCTTCTCTACTTCGAATACATGAAAGGACTCACAGTGCAGAAAAACCCTATAGCTGTAAACAATGTGGTAAGGCCTTTAAATCTCACAGTTCCCTTCGGGTCCATGAAAGAAACCATACTGGGGAAAAGCCCTATGAATGTAAACAATGTGGCAGGTCCTTTATTTATCCTTGCTTACTCCAGACCCATGAAAGAATTCACAGTGGTGTGAAACCCTACGAATGTAAACAGTGTGGGAAAGCCTTTAGAGGTCATAGTTCCTTTCGGGTCCATAAAAAACTTCACAGTGGGGAAAAGCCCTATGAATGCAAACAATGTGGTAAGTGCTTCATTTATCCATCCTTACTTCGAATGCATGAAAGAACTCATAGTAGTGAAAAACCCTATGATTGTAAACAATGTGGTAAGGCCTTTAAATCTCGTAGTTCCCTCCGAGAACATGAAAGAAACCATATTGAGGAAAAATCCTATCAGTGTCAACAGTGTGGTAAAATCTTCAGACGTTATAGTTCATTTCAAAACCATAAACAAATCCATGCTATACAAAAACTCAATGAATGCAAACAATGTGGTAAGATCTTCATTTATCCTTCTTTTCTTCAGAGGCATGAAAGAACTCACATTTGTGAAAGAACCCTATGTATGTAAACAATGTGATTAAATCTTTGCCATATCACAATTCTTTTAGGAGAGGTAAATCTCATTTGGGAGAATAGATATTGAATAATGTGATAAATTCTTTTTACAGTTATCAACTGCAGAGAAAAATTTATATGTAACAGTATGAGTATAAAGTGGGATAGCCTTCTGAAGTAATCATCCTTTTCAAATGTATGGAATAACTCATAATGAAGTAGAACCATGTTTCCTACGACATTAAAAAATTGTTATGTTAGAAGGGAATTCTGTGAATATAAACAATGTGAAAACTCATATGTGGTGAAAATTTTGGAGTTTTTTTTATTTTTAAAAGATGGAAATATTATAAGAATATGTTTTCATTTTTCTCCCAGATATGGAGTATGGGGCTGCGTCACAGCAACTGATTATGATTTGCCTTGTGTTCTAGGAGGGGTATGGTTTTTTTCAGCTGCAGGTTGTTTCTGTGATTACGTGACATTTGGAATTCTGGGGACTTTTCAGAGGGTATATAAATGCTGGGGCCCCAAGACACGAGGCTGTTGGTGGTGGGTTGCTGGTTGCTCTTGGTCACCATTTGTTATGTAGTCTGTGCAAAGAAACCAAAAGCAGTTAGAGATCCTGACAGCAATGATCAAACTTGCCCCCAGGACCTCCACACCCCTAATAAGCAGGAAATAGTCTAATAATGACATCGCTCCCTTTCCCCCACATCCTTGTTTTCCTTGTTTTTTTTTTTTTTTTTTTTTGAGACACCAGCACAAAATGTATTGCAGCTGCTTCCACTGGGATGTCTCTTGCTCTGCTCCCAGAGAAGATTTTCTGGTTTTTCTTTTTCTTCCTCCTGTATTCTTTTTCAAAAAAAGTTTGGGAGAATAGATGGAAACACTGCAGCTGGAAATGGAGGAACTCGGAAAACAATAAATGGCTGACATGGGAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165-Zfp788:NM_023363:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF079757=C1_4=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF079757=C1_4=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGGAAGATGAGCACACA
R:
TCACAGTGCTGTTCTCCAACA
Band lengths:
344-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: