MmuINT0180111 @ mm9
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80713382-80714868:+
Coord C1 exon
chr10:80713382-80713479
Coord A exon
chr10:80713480-80713996
Coord C2 exon
chr10:80713997-80714868
Length
517 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACGGGACCCGTTGTCTGCAGCGT
3' ss Score
5.27
Exon sequences
Seq C1 exon
ATGGCCCGGGGCTACAGGACCCTTGTGAGAAAGGTCCACAGGACGCCCTGGAGCCCATGACCCCACAGCAGCGAGAAGACCTGACGGCCAGTGCGCAG
Seq A exon
GTATGTGGGTCCCCCTCCCACATTCTGGATGAAGGAGTGGGGCCGGGAGTAAGGAACTCCCACAGGCCACTGACTGACCTGGACCGTGTGAGACCCCAGGGCTCTCCTGTCATACACAGCCCTGGGTCCCATACAGCAGCGCAGGTGGAGGCAGAAGGATCAGAACTTAAAGGCTGTCTTTGACTACTGAGAGTGTTTGAGGCTAGCCTTGGCTACATGTGCTCCAGTCTCAGAAGTACACAGTCACACAGGCCCAAGTACCAAACACTGCCACTTTCATGGGGGTTGAGTATTTTACAAGGAATTTAGGGTTCCTCTACCCAGGAAGTACAGGTGGGGTCCCAAGAGCTCCAGACCAGCCTGTGCCACCAGCTGGTGGTGACATTCCCTAGGGCCACATGCCTGGTACCAGAAACGGTAACAGGCAACAGAACAAACAACCCAGCCCCCTGGGCACAGGCCTGATCCCGGAGGCCGGGCTAGGCTAGCACATCCTGACGGGACCCGTTGTCTGCAG
Seq C2 exon
CGTGCCCTGCGTCTTGTGGCCTTCCGGCAGATACACAAGGTCCTTCACATGGAACAGTTACCTCCACGGACCAGATTCGGGGCCGGGGCCCGGGCCCGGAAGAGGATGAGGGAGGCTAGTCAGGCCCAGGAGGGCACCAGGGAGAGGAAGCGGGGCCGACAGGGCACAGCAGGGCTGCCTTGAGCCAGTCATCACCACCAACCTACACCTCCCATACCTGAACAGGTGTGGTCCCTCCAGCTGCTGGCTCCTCCTGGTGTGGATGCCTCTGTCATTTTGTTTGTAGGTTTATTTACAACGCAGTGGGGGTTCCCCTGAGGTGACCCTCATGCTCATGGCTGTCACCCACCACCCCCAGGCCAGATAGCAGTGATCTCCTTGGTTTTAATTGCTATTTGAAACTCCCTTAATGTCATAAGTGAATGGGATCTGAATTGCCTCCTCGAGATGCCAGGAAGGGTGGCCTGGAAGATTCTATGGGTCACAGAGTTGGGGTAGAGGAGCAGAGAGCACAGAATGAGATTCCCCAGGCCCAAAACCCACCATATCCTTTAAACAGATCCCCTTACTACACACCAGCTGTGAGGACACTGTCACCCCACAGTGCAACCCTAGCCCCAGTCACTGAGTGCCTTCCGCAGATGGCCGACTCCGCCCCATGTCACCCTGTGGACCACTGGGCGTGGACACAGCTCTATCCATTAGGCCTCCTTTGCCTCCTTTGGACCCCCTTGTATCACCCCTAGGCTTCAACCCTGTTCCCTTCTACCTGTGGCTTTTAAAGGCCAGCCCACACATGGCGCAATGCCTGGAGTCTGTAGAATCATCCAGAACTTGGCTAGGGTGGGGAATAAAGCAGATCTGCCCGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-Zfr2:NM_001034895:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=NA C2=0.700
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(45.7=100)
A:
NA
C2:
PF075289=DZF=PD(14.3=56.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAGCGAGAAGACCTG
R:
GAACCCCCACTGCGTTGTAAA
Band lengths:
347-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: