HsaINT0185618 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3804022-3807267:-
Coord C1 exon
chr19:3807170-3807267
Coord A exon
chr19:3806124-3807169
Coord C2 exon
chr19:3804022-3806123
Length
1046 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AGGCTGTGTGTGCCCCGCAGCAC
3' ss Score
6.98
Exon sequences
Seq C1 exon
ACGGGCCCGGGCTCCAGGATCCCTGCGAGAGAGACCAGACAGATGCCCTCGAGCCCATGACCCTCCAAGAGCGGGAAGACGTGACCGCCAGCGCCCAG
Seq A exon
GTAGGAGGGTCAAGTCACGGCAAGGGTGACACCCAGGCCCCAGCTCCGGCTTGCAGCTGTGCAGTGTTCCCCGAAATGGCCTGGGTTTCCCCTTCTCTCCCTCCCACTGAGATGTACAGGAACAGGAGGGCGGCCCGTGGGTGGCAGGACCACGCACAGGGACAGGGCCAGCCTGGCATGGTGGCGTGGGGCCAGCAGCTGAGAGCCAAAGCCACCACCGTTAATGACGCCCAGACCTCAGGTCTCATTGGCAGGGACCGTCCTCCCCCACACCACTGACCATGGTCCTAGAAGCCCAGCCGTGGCCGACAGCTCCGCCTGCCCAGCCCTCACCTGTGGTTACCTTGTTTGCAAATTTGTTTATAAGAAAAATCTCCTAGCAGCACCAAAACCAAACCGCATCGGGTCTGACGTTTCTGAATTTTGCCTTGAATGGGATCACTGGAATGGCTTGCAGTGCAGGATGTGGGGTCCCTCCAGTGAGGCGGAAAGAGCTGGTGGTCAGTGGAGCGGGGGGGCCTCCTGGGACAGTCCTTGTGGTCAGCCGGCACCACGCGAAAATTCCTCAGGCCCTGCAGTGACCCAAGCTCCGCAGTCGTAAGAAGCGGTGTCGGCCGGGCCGGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCACACGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGTGGTTGCAATGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTGTGTCTCAAAAAAGAAAGCGGCGGGGGGCCGGGGGCTATCTCGAGGGATACAGGATAGGCCTGGCCCATCTGCTGGTGGCCACAGACACCAGCCCCTCTGTGTCCCCAGCACTCGGGGAGCAGAGCGGGCGGGGGTCCTGACAGGCTGTGTGTGCCCCGCAG
Seq C2 exon
CACGCCCTGCGAATGCTGGCCTTCCGGCAGACCCACAAGGTCCTGGGCATGGATCTCCTGCCGCCCAGACACCGGCTGGGGGCCCGCTTCCGGAAGAGGCAACGGGGACCTGGCGAGGGAGAGGAGGGCGCAGGGGAGAAGAAGCGGGGCCGGCGGGGCGGAGAGGGGCTCGTGTGAGCCGCCTACCTCCCCCACCTGCGGGCCTTTGCATCCCTGCACTCCTGGACGTGTGCGCGCCGACCAATGGCTGCTTCATCCCCGACGTTGGACAATGGTCATTTCCTTTTGAGTAACGCTCTGTAGGTTTCCTTTAAAACACCTGTGCTTCAGACCGGGCACTGTGGCTCATGCCTTTAATCCCAGCACTTTGGGAGGCTGAGTTGCTTGAGCCTGAGAGTTCAAGGCCAGCCCAGACAACAGAGTGAGACCCCCATCTCTCCAAAATATTTTTAAAAATCAGCTTGGCATGGTTGGTGGCCAGGCGCGGTGATTCACGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGTGGGCAGATCGCCTGAGGTCAGGAGTTCGAGACCGGCCTGGTCAACATGGTGAAACCCTGTCTCTAGTAAAAAACACAACAATTAGCCTGGCGTGGTGGTGTGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGTCCGGAGCCTTGAGGCCAGGAGGGCAGTGAGCTGTGATTGCACCGTGACACTCCAGCCTGGGCAACAGAAGAAGACTTTGTCACTTAAAAGAAATGTTTTTTAACATTTGTGCTTAAATTGTTACAGAAATGACACCATCCAGCCCTGGGAGTGGCACCCCTTCCTCGAGGGCCCCATCCCCCACAGCCAGGGGGGCCAGCAGTACAGCAAGCAGATTCTAAACTCGGGGGCATCTTGCTGGCTCTAAACTCACCTCGTGGTACAGGAAGGGGTTTTAAAATACTTCCTCTGGGCTGCGCATGGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCCAAGCTTGGTGGATCGCTTGAGCCCAGCGGTTTAAGATCAGTCTGGGCAATATGGTGACACCCCATCTCTACAAAAAATTAGCCAGTTGTGGTGGCCCAAGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCCGTAGGATCCCTTGAGCCCAGGAGTTCGAGGCTGCAGCGAGCCGAGATTGCGCTACTGAACTCCAGCCTGGGTTACAGAGCGAGACCCTGTCTCAAAGAAACAAACAAACAAACAAACAAACAAACAAAACTTTCTTTGGATGCGGCTGCGGCATGGATTTGAAATCACGTGGGCAGGCCCTGTTCTGGGGCCCCACCACATGTGCAGGACAAGCCCAGGGGAGCTCCCAGCCGGCATCCCCACGCCCCCAGCCCAGCCTGCTCCAAACAGACCCCCCACCCACCTCCACAGCCAGGATGTCAGCAGGGCCTGAGCCAGGCTCGTCCCCTGTGGGGAGAGCCACAGGGCCAGGTGGACACGCCGACGGGCGATGAGGATCCTGGCTGGGCCTCCCCCGGGAACAGCTGTGCTGGACAGTCAGACCCGGAGCCCAGAGGCACCCCCACCCACCCCCCGCCCCGAGCCCTGTACCACTGAGTGCCTTTCACAGAGAAAACCCACTCTGCCATGTGTCACTGAGGCCTGGATTTGAGCTTCCGTCCTTCCTTCCTCCCTCTCTCCCTGATGTAGGCCTTGGCTGGCCCTGAGGCAGGGGGTCCCCAATCCCCCCTTGTGGTAGCAGGGCCCGGGACCCGTGCCTGGGGGACCCGGGGAGGGGCCGCCGTCTTGTGGATGCTGGCCATGGTGGGCAGGCGCCTCCTGGCACTGATGGATGTGGGGGCACCCCCTTCTGAGTCCCCACCCCAACCTGTTCAAACCTTCCGCTTGGTCAGTTTTTTTTTCTTTGGCCAGCTGCCCAGTGGCATTGAATGAGAAAAGTCCACCTTTGGGCAGATGTGATCTCCAGCCAGTGGCTCAGTTTTGTTTCTCTGTGTTTGAAGGACAGCCTGCATGTGGCTCTGTCTGAATGTCTTTGTAGAGCTACCTGGAAATTGGGAGGCAGGGGGAATAAAGGAAATCATTTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=NA C2=0.603
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(13.0=100)
A:
NA
C2:
PF075289=DZF=PD(8.9=37.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCAGACAGATGCCCTC
R:
ATGACCATTGTCCAACGTCGG
Band lengths:
348-1394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)