RnoINT0168819 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11335478-11336440:-
Coord C1 exon
chr7:11336343-11336440
Coord A exon
chr7:11335845-11336342
Coord C2 exon
chr7:11335478-11335844
Length
498 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
ACGGTACCTGTTGTCTGCAGCAT
3' ss Score
6.7
Exon sequences
Seq C1 exon
ATGGCCCAGGGCTACAGGACCCTTGTGAGAAAGGACCACAGGATGCCCTGGAGCCCATGACCCCACAGCAGCGAGAAGACCTGACAGCCAGTGCACAG
Seq A exon
GTGCGTGGGTCCCCCCTCACATGCTGGGAGTAAGGAACTCCCACAGGCGACAATGACTGGCCTGGGTCACATGAGACCACAGCACTTGCTTGTCATAGCCACACAGAGCCCTGGCTCCATCTAGCAGTACAGGTGGAGGCAGAAGGCTATCTTTGACTATTGAGAGTGTTTGAGGCTAGCCTTGGCTACATGAACACCAGTCTCAAAAGAAGTGCACAGCCACACAGACCCAAGTACCAAACATTGCCACTTTCATGGGGGTTGAGTATCTTACAAGGAATTTGGGGTCCCTCTACCCAGGAAGTAAAAGTGGGGTCCCAAGATCTCCAATCCAGCCCATGCCACCGGCTAGTGGTGACATTCCCCAGGGCCACATGCCTGGCACCAGAAACTGTAACAACAGAACAAACAGCCCAGCCCACTGGTCCCTGGGGACGCAGGTCTGATCCCTGAAGTCCAGCTAGGGTAGCACTCCCTGACGGTACCTGTTGTCTGCAG
Seq C2 exon
CATGCCCTGCGTCTTGTGGCCTTCCGGCAGATACACAAGGTCCTGCACATGGAACACTTACCTCCACGGACCAGATTCGGGGCCCGGAAGAGGATGAGGGAGGCTAGTCAGACCCAGGAGGGGGCCAGGGAGAGGAAGAGGGGCCGGCAGGGCACAGCAGGGCTGCCTTGAACCAGCTATCACCAACCTACACATCCCATACCTGAACAGGTGTGGTCCCTCCAGCTGCTGGCTCCTGAAGTGGGACGCCTTTGTCATTGTGTCTGTAGATTTATTCATGATGCTGTGGGGGTCCCCCTGAGGTGACCCCATGCCCATGGCTGTCACCTACCCACCCCCAAGCCAGATAGCAGTGACCTCCTTGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.679
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(13.0=100)
A:
NA
C2:
PF075289=DZF=PD(8.9=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACAGGACCCTTGTGAGA
R:
ATGACAAAGGCGTCCCACTTC
Band lengths:
347-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]