BtaINT0164447 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21403825-21404904:+
Coord C1 exon
chr7:21403825-21403922
Coord A exon
chr7:21403923-21404626
Coord C2 exon
chr7:21404627-21404904
Length
704 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GACAGCTGGTCTGCCCCCAGCAC
3' ss Score
5.31
Exon sequences
Seq C1 exon
ATGGGCCCGGGCTCCAGGATCCCTGTGAGAGAGACCAGATGGATGCCCTCGGCTCCATGACCCTCCAAGAACGAGAAGACATCACGGCCAGCGCCCAG
Seq A exon
GTAGGAGGCCAGCCCAACTTGGGCCCATGTGAGCTGGCTGCAGGCAGCCCGGCTCCCAGCCCCTGTGCACATCTCTGCTGCATCCCAGGAAGCGGTCTGGGCCCGCTTCCCGTCCTCTTCCCTGCAGAATCAGGTGGCCTGTGGGTGACAGGACTGCTTCCAGGGGCAGGGCCAGCCCAGCCCAGAACTGAGGCCGTGATGAGGTGCAGACTTGGGGCCTCATCGTCCTGGGAGTACCCCAAGGCCCCAGGTCTGCACACACCCAGCCAGGCCTCCTGCTGCGCCTCAACAGCTTCAAGAATCAAAACATTGCCCACCCCACCCCCACCGCCCCATCTCTGGCTTCCGTTTCATTTGCAAATTCTATTAATGAGCAAGTCTCTTCAGCAGACTTCACATTGGGCATGACATCATGAAGGGTCTTAAGTGGAAGGAGTCAAATTGCTGTTAATCAGAGCCCAACTGGGAGAAGCAGGATCCAGGGTCCCCTTAGCAGATGAGGAGGAGCTGAGGTTCCCGGGCTTCCGGGCAGTGTCCTCGGCACCAGCGGGTGTGAACAGCTCCCAGCACAGTTCCTCATGCCCAGAGGTGCTTTGAGCTTGGCCACTGCTGGGAGGGTGTGAGAATGCCTGAGTTCACACAGACTGTGTGAGGCGGGCCAGCGGGTGCGGGCAGGCCGGTCCTGACAGCTGGTCTGCCCCCAG
Seq C2 exon
CACGCCCTGCGCATGTTGGCGTTCCGGCAGATCCACAAGATCCTGGGCATCGACCCGCTGCCTCCCCCCAGAATCAGGCTGGGGGCACGCTTCCGGAAGAGGCCACGGGAGGCAAGCGAGCTGGAGGCCAAGGTGGGCAGCAACCAGAGGAAGCGGCCTCGCCTCCCCAATGGGACCTGACACACTGCCGCTGAGCGGCCACTTCACCCCTGACACCGACAGTCCACGTTTCCCTTTGCAGTAACATTCTGTAGATTTCTTTAAACACACCTGTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=NA C2=0.559
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(13.0=100)
A:
NA
C2:
PF075289=DZF=PD(8.5=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCAGATGGATGCCCTC
R:
AAGCACAGGTGTGTTTAAAGAAA
Band lengths:
347-1051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]