MmuINT0180111 @ mm10
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81250637-81252123:+
Coord C1 exon
chr10:81250637-81250734
Coord A exon
chr10:81250735-81251251
Coord C2 exon
chr10:81251252-81252123
Length
517 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACGGGACCCGTTGTCTGCAGCGT
3' ss Score
5.27
Exon sequences
Seq C1 exon
ATGGCCCGGGGCTACAGGACCCTTGTGAGAAAGGTCCACAGGACGCCCTGGAGCCCATGACCCCACAGCAGCGAGAAGACCTGACGGCCAGTGCGCAG
Seq A exon
GTATGTGGGTCCCCCTCCCACATTCTGGATGAAGGAGTGGGGCCGGGAGTAAGGAACTCCCACAGGCCACTGACTGACCTGGACCGTGTGAGACCCCAGGGCTCTCCTGTCATACACAGCCCTGGGTCCCATACAGCAGCGCAGGTGGAGGCAGAAGGATCAGAACTTAAAGGCTGTCTTTGACTACTGAGAGTGTTTGAGGCTAGCCTTGGCTACATGTGCTCCAGTCTCAGAAGTACACAGTCACACAGGCCCAAGTACCAAACACTGCCACTTTCATGGGGGTTGAGTATTTTACAAGGAATTTAGGGTTCCTCTACCCAGGAAGTACAGGTGGGGTCCCAAGAGCTCCAGACCAGCCTGTGCCACCAGCTGGTGGTGACATTCCCTAGGGCCACATGCCTGGTACCAGAAACGGTAACAGGCAACAGAACAAACAACCCAGCCCCCTGGGCACAGGCCTGATCCCGGAGGCCGGGCTAGGCTAGCACATCCTGACGGGACCCGTTGTCTGCAG
Seq C2 exon
CGTGCCCTGCGTCTTGTGGCCTTCCGGCAGATACACAAGGTCCTTCACATGGAACAGTTACCTCCACGGACCAGATTCGGGGCCGGGGCCCGGGCCCGGAAGAGGATGAGGGAGGCTAGTCAGGCCCAGGAGGGCACCAGGGAGAGGAAGCGGGGCCGACAGGGCACAGCAGGGCTGCCTTGAGCCAGTCATCACCACCAACCTACACCTCCCATACCTGAACAGGTGTGGTCCCTCCAGCTGCTGGCTCCTCCTGGTGTGGATGCCTCTGTCATTTTGTTTGTAGGTTTATTTACAACGCAGTGGGGGTTCCCCTGAGGTGACCCTCATGCTCATGGCTGTCACCCACCACCCCCAGGCCAGATAGCAGTGATCTCCTTGGTTTTAATTGCTATTTGAAACTCCCTTAATGTCATAAGTGAATGGGATCTGAATTGCCTCCTCGAGATGCCAGGAAGGGTGGCCTGGAAGATTCTATGGGTCACAGAGTTGGGGTAGAGGAGCAGAGAGCACAGAATGAGATTCCCCAGGCCCAAAACCCACCATATCCTTTAAACAGATCCCCTTACTACACACCAGCTGTGAGGACACTGTCACCCCACAGTGCAACCCTAGCCCCAGTCACTGAGTGCCTTCCGCAGATGGCCGACTCCGCCCCATGTCACCCTGTGGACCACTGGGCGTGGACACAGCTCTATCCATTAGGCCTCCTTTGCCTCCTTTGGACCCCCTTGTATCACCCCTAGGCTTCAACCCTGTTCCCTTCTACCTGTGGCTTTTAAAGGCCAGCCCACACATGGCGCAATGCCTGGAGTCTGTAGAATCATCCAGAACTTGGCTAGGGTGGGGAATAAAGCAGATCTGCCCGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949:ENSMUST00000117798:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.700
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(13.0=100)
A:
NA
C2:
PF075289=DZF=PD(14.3=56.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAGCGAGAAGACCTG
R:
GAACCCCCACTGCGTTGTAAA
Band lengths:
347-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types