DreINT0177953 @ danRer10
Intron Retention
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4671913-4673603:-
Coord C1 exon
chr22:4673506-4673603
Coord A exon
chr22:4673425-4673505
Coord C2 exon
chr22:4671913-4673424
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
GACGTATCTTCGTTTTCCAGCAT
3' ss Score
7.63
Exon sequences
Seq C1 exon
ATGGTCCTGGTCTTCTCGACCCATGTGAGAAAGGTCAGACAGATGCTTTGGGAACCATGTCGAAACAGGCTCGTGAAGACGTAACCGCTAACGCACAG
Seq A exon
GTACTAAACTAATGTGACTAGTCAAGTTTTTCAACTATTTTATATGAGCTGTTCTGTAAGGGACGTATCTTCGTTTTCCAG
Seq C2 exon
CATGCACTACGTCTGCTGGCTTTCCGTCAGATCCATAAAGTCCTCGGCATGGGCTCATTGCCGGTGTCCAAAGCTGCCGCTAGAAACCGCAAAAGACGACGTGACGGCAGCGACGTCGGTGAAGGAGAAGCAGACGGAAAAAAGGACAAAAAAGATGATTCCAACGACCCCTGAGACGTCTGCGTAATCTCAGCAACCTTTCAAAATGTATAAATATCCCTCAAAAGAGGAAAGAAACAAAGCAACACCCAATGGTTCTGTTTTTTGAAAATGACAAGTGACGGAAATAACTTGTATTCGTTCCCCTTTTATGATGTAATACCTTTTTATTACATCTGAGATGAAAATACGCTCCCAAAATTGGACTTAGTTTTCAGCGAATCAGATGATGACGATTGAACGTCACGCTACTTTAATATAAACCGTTATTGAAAGTCACATTAGTTCTATTAGGCACTTTTACGTAATAAAGGCACTTAATTAAAAGCTTTAATCATCCTGACACAGGCCAGTCTCTTATGTTTACATAAGCATTTCATTTCAAAATATATATATATGAGGTGGGGCCCAAAAGTCTGAGAGCAGAGATTATTTTTTTAGTTAAAAACATACGTTTTATGATTTAAATTAATGTGAAATGCATATTATAGAATTATATTTCAGATTCTGCACATTTAAAACAAAGTGAAGGTGATGTTAAATATGTAAAACAGACTTAAAAACACATCCGAATAAAAGTCAACGTCTCAGACTCTTGAATCCCGTCTAAATCGGTTTTATGTGATAATATTATTATAACGAGTTCTATAATAATATTATGGTGATTTCATGCAAATAAATTAGTTTCTCTCTATACTGTGTATCTTAAAATGGTTTTAAAAATGCGTAGTTCCTAGTATTCACTAATAATAAGCTGTTAAAAGTCACGATTCAGCTTTGTGTGGTCGTCTATTAACCCCCGACACTGGATTTCTACACGTTTAGCGCAAAACACAGACATCTCCGCTATCATTATTTTGAATTGCATACTGAATAATCGATCATTTCACGGCAAGAAGCTGGCGTTTCGACAGGGTATCGAGAAGTCGTTCTTCGGCGAACGACGACAACGTTAAAAAAATATATATAAAAAATAAGTCTGTGGTTCTTCACACGTGCCTGCGGTAAAGATTTAAAGTACTTGAAATGTGAATGACGAGGCGAAGAAGTGCGGTTCTTCATATTGCAATATAATATAATGTAATACCTCTCTCTATTCTTACATTTTTATATAAATCTTGATGTGAGATGCGCAGAAAGTTTGCTGTTAGTATGTTGATTCTTCATATCGCTTGGATTTGCGTTTCCGCACACCCGTTTTTACGTACAATGCGACGGTTTCCCGCCATTTTTAGATGTTCCTGCTGAGTGTTTGTTGACTTTTTTTTTGTAGGACTGTGAATAATTCTAGCGTGATCCTTCATTTGGAATATCTGTGTAGTGCTGCATAACGAAATAAACAGAGAAACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683:ENSDART00000122341:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=NA C2=0.623
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(13.4=100)
A:
NA
C2:
PF075289=DZF=PD(9.3=39.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTCGTGAAGACGTAACC
R:
GTCTGCTTCTCCTTCACCGAC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]