MmuINT0180094 @ mm9
Intron Retention
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12110598-12115205:+
Coord C1 exon
chr15:12110598-12110695
Coord A exon
chr15:12110696-12113713
Coord C2 exon
chr15:12113714-12115205
Length
3018 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TATTCTAACTCTATTTGCAGTTT
3' ss Score
7.41
Exon sequences
Seq C1 exon
GCAGCCCTGGACTTCTGGACCCTTGTGAAAAGGATCCCTTTGACACTTTGGCAACAATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAG
Seq A exon
GTAATTGAATTCTTGTTGGATTACTGTCTCTAAGGCCTGGGAGTTTTATAATTGTTTCTTTATGTGTAATAATAACCGTACTAGTCATTGTGATACTTATTTGGGAAGTAAGCCTTTAAAGAGGTTATTAAAAAGATTTACTGATTCCCACACCGGAAGTTGCTCTTCTAGCCGTGAAAGAAGGACGGCGTGGTCTTCAGTTTGCTATGTCCACTAACAATATGTCCGACCCACGAAGGCCCACCAAAGTGCTGAGGTATAAGCCTCCCCCGAGTGAGTGCAACCCAGCTTTAGACGACCCGACTCCGGACTACATGAATCTTCTTGGCATGATCTTCAGCATGTGTGGCCTCATGCTTAAGCTGAAGTGGTGTGCTTGGGTTGCTATCTACTGCTCCTTTATCAGCTTTGCCAACTCGCGGAGCTCGGAGGACACTAAGCAGATGATGAGTAGCTTCATGCTCTCTATCTCGGCTGTGGTGATGTCCTATCTGCAGAATCCTCAGCCCATGACGCCTCCCTGGTGATGCCACCTAGGAGGGTTGGATCCTGGACTCAGGCCCACCTTCTCTCTGGCCTAACCTTTGGCTGCCTCCGCCCTCCCTCAGCTGCTGTCCTAAACTTTCCTGAGTGTGGTCTCTGGGCTCCCAGCTGAATGGAAGGAAGTTGGCCCTTTCTTTGGGGCCCTGCTTCTGCTTTGACAAAGAGATAAACCTGCAGACTTCCCTTTTACCTTCTCCCCCCCCTCCCCGCCTCCAACCCAGCCACTGTTATGAGAAACACTGTTCATGTTTCTACGTAGTCACTTGTTTTCTTATTGAAACCAGTTGATATAAAACTTTCCGCTCTGAAAAAGATTTACTGCCGGGTGGTGGTGGCACAGGCCTCAGGAAGCATAGGCAGGCAGACTTCTGAGTTCCAGGATAGCCAAGGCTACACTGAAAAACCCTATCTGGAAAAAAAACAAAACAAAAAAGATACACCTTGCCAGAGATGGTGGAACACACTCACTTAATCCCAATGCTCAGGAGATCCAGGCAAGTAGGTTTAGGGCATACCGGGGCTAAACAATGAAATCCTGTCTCTAAAATCAAACAGAAAAGATTTACCTTAAACTAGAATTCACTGATAAGATTTTAAATATTTACTTATGTGGATGAATCTGATTGTTGTATAATTTTGTGTTTGTCTTTATACACCATGAAAAAAACATTAAACACCTCATTAATTACCTAATCAAGGAAACACTTACAAAGCTAATCTCTTCTTCCCTAGTCACTCTACCCCCAAGATCCTTACGGGAGTACAGATACATGTAGCTCAGTGGTAATGTCTTGCCTAACATACACAAAGTACCCACTTCCCCAGGTTTGTCCCAGCACTGCAGAAATAAACATTAAGTATTGATAGTGTCAATTCTAAGATTAAGGCTAGAGAGACGGCTTGATGTTTAAGAGCATTTGCTATCCCTGCAGAGGACCCAGGTTTGCTTCTGAGCATCTGCATGGCAACCCACATCTATTCATAACCATTTCTAGGGGATCCAACATTCTCTTTTGGCTTCCTTTGGCGCCAGGCAGGCACTCATACATACACACACAGATATCTTTTTGTAACATTCTAAAATTTCAGGAATAATTTGTGTGAATCCTCTAATTATATTGCTACTAATTAATATCCACTTATATGGCAGAATTCTCTAATGAACCACATTAGAAATGCATCCAAACCAAGATAGCATGTGGCTCAGTGACAATCTTGTCTAGATAATTAAAGACCCTGGATGGTATACCCTGACACTGCCTGCAAAATTAGGGAAAGGTGTTACAGGGATTATAACTGAGTAAAGTCTGAACACAGTAGTACAGGAAGCTACAACTCTGTAGTGGAAGCTACCATTTATCATTAGGTTAGGAAATCTCTAGAAGGTTGTTGTTTGGGGTTGGTTGGTTGGTTGGCTTGTTTGTTTTTCTGAGCCAGGGTCTCACTATGTAGCTTTTTAGATGGATCTCTGTGCTTTTAAGGCCAGCCTGGTCTATATTCTCAAGTTCTACACCAGCCAGGACTATATAGTCCTAGATGAATACAAGGATATGTTCATATTCTCTCTCACAGTATACTTGTGGCACATATAAACCTTTGGAATCAAGGGACCTGATACTGGATTATTAAATATTTAAGAGAATTTATATTTAATAAACTTGATACTTCAGTGAGAAAGGACAAATCATCAGTAGAATGGTTTTGAGATAGCTGATGATTCTATTAAAAGTAGATATGTGTGTGGGTTAAATGACTTAAGCATACATCAAAAGACTGAGAAAGGCTCTTAACATTAAAAGATGGGCCTTTTTTTTTCTTTTAGGTTAAAGGATTACATATTAAAAATATTGTATAGACTCTTTAAGGCCAAAGAAGTGTGCTCATTTCTCCCGATTAAAAGTTATGAGTAAGAATTGGGTATTTTGCCTTTTGGGGGTGGGAGATTTGAAACAGGGTTTCTCCTTACAGCTCTGGCTTTCCTGGAGCAGTGAATTGAGCCTGGCTCCTCTGTAGGAGTAACGAGTTGCTTTAACCACTGACATCTTTCCACCACCACCACCACCCCTTATGAATAGACTAAATTTATTTAAAGATTGATATTTTCTAGCTTAATTATTTGGAAAGCAAATAAGCACACAGAAAAGCCTCCTCCCCAAAAAAATATAAATAAAAAAGTCTATCAGGACATAGTATATGTCCCTTCTGATTAATCATTGGTGGTGAAACAACCCATTCAGGGTGTCTCTTCCATCACAGTGGATTTTTTTCATATTGTTACATGGAGAAGTTAACTTAGTAAGAATTGATGTGCTTCTGTGCCAGTGAGATAGCTCTGCAGGTAAAAGGGAGACTGACCCCCAACTTGTACTCTGGCCGTGGCAGTCATGTGCACACAAGTAAACTGAATAAATATAAAGAGCAGATTTTAGAGTGTTTTGGCTTTAAATTAATTCTATATTCTAACTCTATTTGCAG
Seq C2 exon
TTTGCATTGAGACTCCTTGCATTCCGTCAGATACACAAAGTTCTGGGGATGGATCCATTACCACAAATGAATCAGCGCTTTAACATCCACAACAACAGGAAACGAAGAAGGGATAGTGATGGAGTGGATGGATTTGAAGCTGAGGGGAAGAAAGACAAAAAGGATTATGATAACTTTTAAAAAGTTTGTGTAAATCTTCAGTGTTACAGTAGGTGCCGGTTTATTGGCTGTTTTCCATTCATATTAATCTCTACTTTAAAAGTTTATCAAGAGTATAAAGAGTTTCATGGAAGAACCAAGTTTTTCTATGATTAAAAACTTATTGTACAGTGTCAGGTATTATATGGATGGAAAGAAAGAGATTTGACTAGGGGGAATATATTGGTCTTTCCCCCCCCCCACCCTTTTTCATTATTTTGATTTTATTGACTGGTTGCCCTTACTCCCTGTATTTTTGTGTCTTTTATTAACTAGTGCATTGTGTTATTAAATCTTTTCTGTATGTAATACAGGATTTGTGCTTCAGTTGCTCTGTGTATTTTGATACTTTTATTGAGAAGTTCTGTTTGCTTTGACACAGTTGTAAGTTACTTTGTGTTATAGATGGCACCCTTTACCCTTACTACTTTATAGCAGTGCGGTTTTTTTGTAACGTGAAACTGCAGGAGTTTTCCTTTGTTATTCTGTATGTGAAGGATTACAATATAAAAGCTACCCTGCCATCTAAGTGCTCAGAAATAGCTGTTTCTGCAGATCTTGTGGCATTTGTCTATCTAGTGTGATATATAAAGGTGTAATTAAGACAAATTCCTTAATCTAATCAAGTTTGCTGTTAGTTGTGCATTAGCAGTATAAAAGCTAATATATATTATATGGTCTTGCAACAGTTTTAAAGCCTCTGCATAATTGATAAAAAAATGCATGACATTTTTGTTTTTAATAGACATTTAAAGTAATAATTTTAGGTTTAACACGTAGATCTTTGTACAGTTGACTTTTTGACATAGCAAGGCCAAAAATAACTTTCTGAATACTTTTTCTTCTGTACAAGTGGAAAGGGAATTTTTCACATCTAAGTGGGCTATTGTTTTCAAAAGAACTTTATCATTGTGCAACTAACAATAACTAGCCCTGACTATGTGACAGTTCCCTGTTGATGTGTGCAATTACTCTAGCGGCTTCTACAGTCTTAACACAGTTGAATGATCCCCACATCCTGTCACCCAGATCATTTATAGGTCTATTAACTGTGAGATTGATAAAGTATTACTGATTTAAAAAAATAAGAGTATCTAAGAAAAAAAAAAAACAGAAAATTATTTGGTGTGGCCATCCAACATGCTTATGTCTTATACAGAATGCTAATCCCCTGGCAGTGGTGTAATGAGAGGTCACACCTTACTGTGATGTGTGTGTGCTCTGGTGCACAGATGTCATTTTGTTGTCACAGCACTACAGTGAGATACAGAATAAACACTTAAATTCATGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201-Zfr:NM_011767:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.462
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=PD(8.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: