BtaINT0164429 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41344946-41350662:+
Coord C1 exon
chr20:41344946-41345043
Coord A exon
chr20:41345044-41350278
Coord C2 exon
chr20:41350279-41350662
Length
5235 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
GAATACTCTTTTTGTTGCAGTTT
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTAGTCCTGGACTTCTGGATCCTTGTGAGAAGGATCCCTTCGATACCTTGGCAACAATGACTGACCAGCAGCGTGAAGACATCACATCCAGTGCACAG
Seq A exon
GTACCATTGTGTTCCTAATCCCAGGGCTTTGTTTTATCACTTCCCTTACAGTTTTGGTTTTTTATAGTTGTCCTCTAGAAGAAATTACCATGTAGTATTCATTATTCCTGCTTCTTTAGTAAGTAAGCCCTTAGGATATAATTTAAACTAGATTTCATTAATCTTCAATTTTATTATATTAACTCTGTGTGTGTCCTGTATAAATATAAAAATACTACAGTATTTTCAGTATCATTAAATCTAGTTGTTATATTATATGTCAGGATCAGTAGAGCAACTATTCATGTCCTCTGGGTATACAGAAGTGATGTGCTGTTTGGTTTATGGAAATTTTTGTAATGATTTAGCCTTTCCTGCCACTGAAAAGGCCAGCTAATATAGTAATTAAAAGTGTGGGCTCTGAAGTCTAGACTCCTGAGTTTAAATACCAGCTCTGCATTTCATCTATAAGGGATAAGAGCAGTATCTGTCTCAAAGAAGATTGTTGGGAAGATTAAATAAATTAATCTTTCATTCAGTCTAAAACTTATACAACTTTCCTTTTTTGACTCCAGAAGTGTACTAAGAGGAGAAATGTCTACCAACTATAAACAATAACAATCTAGTCTAAGGCAGTTACACTGGTTGGACTTAAGATTTTGTTCTGTTGTCTCTTCTGGCAAGGATAATTTGAGAGGTCAGGATTAAAATAAATTGTTAGATTAAAAGTAATTTGAGGAAGAGTCAGTAATAATAGAACATTATGAATATCTTACAGACACACAAGATTTCCAATTTGTATTAAACAAGTTTTGTTTTAATTTCTTTGGGTTTAATTTTCTAGGGAAGATGACAGTTTACCATAAGTGGCTTTTTTTTCTTCGTTGGTACTTAAGAAATTATTTTTTGGGTAAGAAGTAGGGCATTTGAAAACTAATAAGAGAATTCTTAGTTGGAAGGAAGGAAAGCTTTAATGTGACTTTGAAGAAAGTGGTCTGATTTTAGGAGGTAGTTAGAAGTGTCCTTGTTAAAAGTGAAGAAGTGAAAAGTGTTAAAAGTCAGTGGGAAAAAAGGGAACGTCATACACTGTTGGTAGGAATATAAGTTAGTGCAGCCACTGTGGAGAATAGTATGGAGGTTTTTCAGAAAAACTAGAGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAGTGCGTGAAAGTGAGAAGTGAAAGTGAAGTCGCTAAGTCATGTCCGACTCTTAGCGACCCCATGGACTGAAGCCCACCAGGTTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTAGAGTGGGGTGCCATTGCCTTCTCCGAAAACTAGAGCTACATGACCCAAAAATTTCTCCTAGGTGTATGGCCAGAAAACAAAACAAAAAACTTTAATTTGAAAAGATATACATACCCCAGTATTCATAGCAGTGTTATTTACAATGCCAAGATAAGGAAGCAACCTTAGTGTCCATCAGCAGATAAATGGATAAAGAAGATGTGGTGTATATATACAATGGAATACTACTCAGCCATAAAAAAGAATAGAATTTTTGCTATTTCCAATACTATGGATAGACTTGGAGGGCATTGTGCTAAGTGAAGTTAAGTCAGAGAAAGACAGATACTGTGTATCACTTATGCTAAGTCACTTAAATTGTGTCTGACTCTTTGCAACCCCATGGACCGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGAGAAGAATACTGTAATAGGTTGCCACACCCTCCTCCAGGGTATCTTCCCGACCCAGGGATCAAACTCACATCTCTTTATGTTTCCTGCTTTGGCAGGCAGGTTCTTTACCACTAGTACCACCTAGAAAGCCCATCACATTTATTTGAATGTAGAAAATACAGCAAACTAGTGAATATAACAAAAATGAAGCAGACTCACAGAACAAACTAGTGGTTACCATTGGGGAGAGGGGAGTGGGAAGGAGCAGTATTGGGGTAGGGAATTAAAAGGTACAAACCATTGCATATAAAATAAGCTATGAGAAACACTGGACTGGAAGAAACACAAGCTGGAATCAAGATCGCTGGGAGAAATATCAATAACCTCAGATACGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGTTCAACATTCAGAAAACGAAGATCATGGCATCTGGTCCCACCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTGGGGGGGCTCCAAAATCACTACAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATGTTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTTTGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCGCCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGAGTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATGAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAACGCTGAAACTCCAGTACTTTGGCCACCTGATGCGAAGAGTTGACTCACTGGAAAAGAGTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACGGACTCAATGGACATGAGTCTGGATGAACTCCGGGAGTTGGTGATGCACAGGGAGGCCTGGCATGCTGCAATTCATGGGGTCGCAAAGAGTTGGACACGACTGAGCAACTGAACTGAAGAATATATTTACAGCATAGGGAAATAGTATATTAATAATAACTAAATGTGTATAACCTTTAAAAATTATGAGTCACTGTATTGGACACCTGTTAATTATTTAATAATTGTACATCAACTATACTTCGATAAATAAAAGTGAGGAAGTTACGTGTACTGCATCATTCCATCTATATAACATTAATGAACTAACAGAACAGATGAGTGATTCCCGGAGTTAGGGATAGGGGCGAGGATAGATGTGGCTAGTGAGAGTCTTGTGGTGATAGTATAGTGCCTTGTGATGGTGGTTAATGCAAACCTGCACATTTGGTAAAGTTACATAGATCTGTATACATCACACATAAACCAAGTGTGTATATAACTGGTGAAATCTGAATAAGCTCTATGGATTGGACCTAGGTCAATTTCAGTTTCTTTGTTGATGGGCCATAGTGCCCATATTAATAATTCACTTTTTTCCCTTGTCTGGGACTTTTCTTCTTTTCCTTCCATAATATTTACCTTTGTTTTTGTATCTGTATTCTCTAGTGATCTTTTTCGAGTTGCTTCTGCAAGATGTAGCTTTTGTCATTTATTCTGATGCCTTCCTGTAAGTGTCCAATAGAGCAGCATATCTTTGAAAGGGCACATTTTAAGGTTATCTTCCCTCTCAAAAAAGGATTAAGTAAACTTTACATCTTCTTTGATGTTGTTTTTAAAAATTTCAAGATGAATTTGTATGGGAATAATTTTAGTATCATCAAATTTCATTTGCTTTTAAATCATTTCCAATTATACATTAGAAATGTCTCTTGTTAGAATTTAGAGGTACATGCAAATCACATGCAGAGGAAGAGCTTACAGAGTGCTCACTCCAGCCTCAGATGCTACTGTGGTTTTCTTTACTGAACTAACTACTCTTCTATTTTGAAACCCCTAGTATGAGAATAGGCTGATGATCAGTAGCAATATTTCTGTAGTAAAAGTGTGTTACTATTCATTATTATGCAGCAGATAACTTTGGATATTTTCTTTAAATGGAGAAGAAAACCTTATTCTGTTTTATCTTTGGGAAATACCTTTTTTTAAGTAACTCTAAATAAATACTGTCCTATTATGATAAATAATCCCTAGTTTCACCTCATAAATAGTAACATTATGCATAATTGCCAGAAAGTGGAAACATCCCAAGTGTCTATCACTTGATGGATGGGTAGGTATACACATGTGATATATTCATACAGTGGAAAATTACTCGCCATTAAAAGGAATGAAGTGCTGATATGTACAAGGTAGATGAATCTTGAAAACGTTATGCTAAGTGGAAGAAGCCAGACACAAAAAGTCATATTGTGTGATTTTGTTTATATGAAATGTCCATAGTAGGCAAATCTATCTAGTTACAAAAGTAGATTAATAGTTGCAAGGGCCTCAGGGTAAAGGGATTGAGGAATGACTGCTATTGGGCCTTGGGGTTTTGGGGGGTGAGGGGAGGTTGGAACATTGGGAAGGTGATGAAAATGTTCTGGGATTAGAGAGTAGTTAATGTTGAAAAATTGTAAGTATACTAAAAAAAAAAAAGCAACAACTGAATTGTACACTTTACAAAAACAAATCTTATATGGAATTATATCTCAAGAAGTAGTCTAAACAATTCTGTTGAAGATTTAACCACATAGTGAAAGTTGCCTTTTAATCAAATGACTGTAGAATCTCCTTAAATATCCCTCAGAATATTGGGAAACTATGTCTCAAAATATCTTACGACACATGAGGTCTTGTGACATTGATGCCTAATGTATTCCTATATATATACATAGCCACAGTAGTGAAAAATCTTTTTTTAGTTCACTAACAAGTTGAAGAAGTATAATCCTCATTTTGTAAACCTGGGGAGGTGTGTGTTGGGAGGCACATGTGCCTGAGGATGAGCACATGGGCATCCATAGAAAAAGTTGCAAGATATGTGAATATGAACCAAAGAGAGGTTCATTTGATGAGTGAGATGCTTTTTTTCTTTGCTGTATACTGTCTTAGGATTTTTTTAATGAGCATAATAATTTTGTTGAATATTTTTTTTAACTTACATTAAAAAAAAAAAATAGCATGCACACAGAAAAGCCTGAAAATAAAAACTTCAGAACATACAGAGTCTTTCATTTATGAACCTTAATATTGTTTAAGGTGTTTCTTTCATTAAACATGCTTTTTTATATTGTTATGTTGGTCTATAAACCTAGTAAGAATTAATATTGGTTCTTTAATTTGACTGAATACTCTTTTTGTTGCAG
Seq C2 exon
TTTGCATTGCGACTCCTTGCATTCCGCCAGATACACAAAGTTCTAGGCATGGATCCACTACCACAGATGAACCAGCGTTTTAACATCCACAACAACAGAAAACGAAGAAGGGATAGTGATGGAGTTGATGGATTTGAGGCTGAGGGGAAAAAAGACAAAAAAGATTATGATAACTTTTAAAAAGTTTCTGTAAATCTGCAGTGTTAAAAAACAACAGGTGCCCATTCGTTGGCTGTTTTTCATTCATAATGATGTCTACTTCGAAAAAATTATCGAGAATTTAAAGAATTTCATGGAAGAACCAAGTTTTTCTATGATACTAAAATCTTAATGTACAGTGTTAGGTATTATATGAATGGAAAGACACCCCCACCCCCACCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414:ENSBTAT00000011072:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.508
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=PD(8.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]