GgaINT0063941 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:9104596-9105372:-
Coord C1 exon
chrZ:9105275-9105372
Coord A exon
chrZ:9104933-9105274
Coord C2 exon
chrZ:9104596-9104932
Length
342 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTTTCTACCTTTTTTGTAGTTT
3' ss Score
7.51
Exon sequences
Seq C1 exon
GTGGTCCTGGCCTTCTGGACCCTTGTGAAAAAGATCCTTTTGATACACTTGCTGTAATGACAGATCAGCAACGAGAGGATATTACTTCAAGTGCACAG
Seq A exon
GTAAGGTTAAGTATGTTTAATGTAAATAAATTTTGATGACATTGATAGCTGTCACTGTCTACCCTCTTCTTTCCAGAAATAAAGTCAACACAGTCATATGCACATGTAACATCTGCTGTACGAAGCTCACAGTCCCAGCTTCAACGTAATGTGTTTTAGCTGCTGGCTGAAACAGTAGATGTGATGTGCACATACTATGTTACCTTTATTATGGGAAGGAAGAACGTGGATAGCAGAAGCTGAGAGTGGTAATATCTGACACCACTTCTTCATTGTTTGACAACTTACTCAAATTTGATGTTTGTTTCTAACTGAAGTATCTTCTTTCTACCTTTTTTGTAG
Seq C2 exon
TTTGCACTGAGACTCCTTGCATTCCGTCAAATTCACAAAGTTTTAGGAATGGATCCACTACCACAGATGAATCAACGCTTCAACATCCATAACAATCGTAAGAGGAGAAGGGACAGTGATGGGGTTGATGGATTTGAAGCAGAAGGAAAAAAAGACAAAAAGGATTATGATAACTTTTAAAAAAATTTCATCTTTTATGCTGAGATTGAAGGTGATAAAATATCCATTTGTTGCCTTGTTTTTACTCCATGCATAATAATGTCTGTTTAAAACATCCAAAACCAATTCAGAAATCAGATTTGGGATAGGACGATATAGCTCTTCTGTGAGGTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.458
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=PD(8.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTGGACCCTTGTGAAA
R:
TGCATGGAGTAAAAACAAGGCA
Band lengths:
342-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]