MmuINT0180094 @ mm10
Intron Retention
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12180843-12185683:+
Coord C1 exon
chr15:12180843-12180940
Coord A exon
chr15:12180941-12183958
Coord C2 exon
chr15:12183959-12185683
Length
3018 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TATTCTAACTCTATTTGCAGTTT
3' ss Score
7.41
Exon sequences
Seq C1 exon
GCAGCCCTGGACTTCTGGACCCTTGTGAAAAGGATCCCTTTGACACTTTGGCAACAATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAG
Seq A exon
GTAATTGAATTCTTGTTGGATTACTGTCTCTAAGGCCTGGGAGTTTTATAATTGTTTCTTTATGTGTAATAATAACCGTACTAGTCATTGTGATACTTATTTGGGAAGTAAGCCTTTAAAGAGGTTATTAAAAAGATTTACTGATTCCCACACCGGAAGTTGCTCTTCTAGCCGTGAAAGAAGGACGGCGTGGTCTTCAGTTTGCTATGTCCACTAACAATATGTCCGACCCACGAAGGCCCACCAAAGTGCTGAGGTATAAGCCTCCCCCGAGTGAGTGCAACCCAGCTTTAGACGACCCGACTCCGGACTACATGAATCTTCTTGGCATGATCTTCAGCATGTGTGGCCTCATGCTTAAGCTGAAGTGGTGTGCTTGGGTTGCTATCTACTGCTCCTTTATCAGCTTTGCCAACTCGCGGAGCTCGGAGGACACTAAGCAGATGATGAGTAGCTTCATGCTCTCTATCTCGGCTGTGGTGATGTCCTATCTGCAGAATCCTCAGCCCATGACGCCTCCCTGGTGATGCCACCTAGGAGGGTTGGATCCTGGACTCAGGCCCACCTTCTCTCTGGCCTAACCTTTGGCTGCCTCCGCCCTCCCTCAGCTGCTGTCCTAAACTTTCCTGAGTGTGGTCTCTGGGCTCCCAGCTGAATGGAAGGAAGTTGGCCCTTTCTTTGGGGCCCTGCTTCTGCTTTGACAAAGAGATAAACCTGCAGACTTCCCTTTTACCTTCTCCCCCCCCTCCCCGCCTCCAACCCAGCCACTGTTATGAGAAACACTGTTCATGTTTCTACGTAGTCACTTGTTTTCTTATTGAAACCAGTTGATATAAAACTTTCCGCTCTGAAAAAGATTTACTGCCGGGTGGTGGTGGCACAGGCCTCAGGAAGCATAGGCAGGCAGACTTCTGAGTTCCAGGATAGCCAAGGCTACACTGAAAAACCCTATCTGGAAAAAAAACAAAACAAAAAAGATACACCTTGCCAGAGATGGTGGAACACACTCACTTAATCCCAATGCTCAGGAGATCCAGGCAAGTAGGTTTAGGGCATACCGGGGCTAAACAATGAAATCCTGTCTCTAAAATCAAACAGAAAAGATTTACCTTAAACTAGAATTCACTGATAAGATTTTAAATATTTACTTATGTGGATGAATCTGATTGTTGTATAATTTTGTGTTTGTCTTTATACACCATGAAAAAAACATTAAACACCTCATTAATTACCTAATCAAGGAAACACTTACAAAGCTAATCTCTTCTTCCCTAGTCACTCTACCCCCAAGATCCTTACGGGAGTACAGATACATGTAGCTCAGTGGTAATGTCTTGCCTAACATACACAAAGTACCCACTTCCCCAGGTTTGTCCCAGCACTGCAGAAATAAACATTAAGTATTGATAGTGTCAATTCTAAGATTAAGGCTAGAGAGACGGCTTGATGTTTAAGAGCATTTGCTATCCCTGCAGAGGACCCAGGTTTGCTTCTGAGCATCTGCATGGCAACCCACATCTATTCATAACCATTTCTAGGGGATCCAACATTCTCTTTTGGCTTCCTTTGGCGCCAGGCAGGCACTCATACATACACACACAGATATCTTTTTGTAACATTCTAAAATTTCAGGAATAATTTGTGTGAATCCTCTAATTATATTGCTACTAATTAATATCCACTTATATGGCAGAATTCTCTAATGAACCACATTAGAAATGCATCCAAACCAAGATAGCATGTGGCTCAGTGACAATCTTGTCTAGATAATTAAAGACCCTGGATGGTATACCCTGACACTGCCTGCAAAATTAGGGAAAGGTGTTACAGGGATTATAACTGAGTAAAGTCTGAACACAGTAGTACAGGAAGCTACAACTCTGTAGTGGAAGCTACCATTTATCATTAGGTTAGGAAATCTCTAGAAGGTTGTTGTTTGGGGTTGGTTGGTTGGTTGGCTTGTTTGTTTTTCTGAGCCAGGGTCTCACTATGTAGCTTTTTAGATGGATCTCTGTGCTTTTAAGGCCAGCCTGGTCTATATTCTCAAGTTCTACACCAGCCAGGACTATATAGTCCTAGATGAATACAAGGATATGTTCATATTCTCTCTCACAGTATACTTGTGGCACATATAAACCTTTGGAATCAAGGGACCTGATACTGGATTATTAAATATTTAAGAGAATTTATATTTAATAAACTTGATACTTCAGTGAGAAAGGACAAATCATCAGTAGAATGGTTTTGAGATAGCTGATGATTCTATTAAAAGTAGATATGTGTGTGGGTTAAATGACTTAAGCATACATCAAAAGACTGAGAAAGGCTCTTAACATTAAAAGATGGGCCTTTTTTTTTCTTTTAGGTTAAAGGATTACATATTAAAAATATTGTATAGACTCTTTAAGGCCAAAGAAGTGTGCTCATTTCTCCCGATTAAAAGTTATGAGTAAGAATTGGGTATTTTGCCTTTTGGGGGTGGGAGATTTGAAACAGGGTTTCTCCTTACAGCTCTGGCTTTCCTGGAGCAGTGAATTGAGCCTGGCTCCTCTGTAGGAGTAACGAGTTGCTTTAACCACTGACATCTTTCCACCACCACCACCACCCCTTATGAATAGACTAAATTTATTTAAAGATTGATATTTTCTAGCTTAATTATTTGGAAAGCAAATAAGCACACAGAAAAGCCTCCTCCCCAAAAAAATATAAATAAAAAAGTCTATCAGGACATAGTATATGTCCCTTCTGATTAATCATTGGTGGTGAAACAACCCATTCAGGGTGTCTCTTCCATCACAGTGGATTTTTTTCATATTGTTACATGGAGAAGTTAACTTAGTAAGAATTGATGTGCTTCTGTGCCAGTGAGATAGCTCTGCAGGTAAAAGGGAGACTGACCCCCAACTTGTACTCTGGCCGTGGCAGTCATGTGCACACAAGTAAACTGAATAAATATAAAGAGCAGATTTTAGAGTGTTTTGGCTTTAAATTAATTCTATATTCTAACTCTATTTGCAG
Seq C2 exon
TTTGCATTGAGACTCCTTGCATTCCGTCAGATACACAAAGTTCTGGGGATGGATCCATTACCACAAATGAATCAGCGCTTTAACATCCACAACAACAGGAAACGAAGAAGGGATAGTGATGGAGTGGATGGATTTGAAGCTGAGGGGAAGAAAGACAAAAAGGATTATGATAACTTTTAAAAAGTTTGTGTAAATCTTCAGTGTTACAGTAGGTGCCGGTTTATTGGCTGTTTTCCATTCATATTAATCTCTACTTTAAAAGTTTATCAAGAGTATAAAGAGTTTCATGGAAGAACCAAGTTTTTCTATGATTAAAAACTTATTGTACAGTGTCAGGTATTATATGGATGGAAAGAAAGAGATTTGACTAGGGGGAATATATTGGTCTTTCCCCCCCCCCACCCTTTTTCATTATTTTGATTTTATTGACTGGTTGCCCTTACTCCCTGTATTTTTGTGTCTTTTATTAACTAGTGCATTGTGTTATTAAATCTTTTCTGTATGTAATACAGGATTTGTGCTTCAGTTGCTCTGTGTATTTTGATACTTTTATTGAGAAGTTCTGTTTGCTTTGACACAGTTGTAAGTTACTTTGTGTTATAGATGGCACCCTTTACCCTTACTACTTTATAGCAGTGCGGTTTTTTTGTAACGTGAAACTGCAGGAGTTTTCCTTTGTTATTCTGTATGTGAAGGATTACAATATAAAAGCTACCCTGCCATCTAAGTGCTCAGAAATAGCTGTTTCTGCAGATCTTGTGGCATTTGTCTATCTAGTGTGATATATAAAGGTGTAATTAAGACAAATTCCTTAATCTAATCAAGTTTGCTGTTAGTTGTGCATTAGCAGTATAAAAGCTAATATATATTATATGGTCTTGCAACAGTTTTAAAGCCTCTGCATAATTGATAAAAAAATGCATGACATTTTTGTTTTTAATAGACATTTAAAGTAATAATTTTAGGTTTAACACGTAGATCTTTGTACAGTTGACTTTTTGACATAGCAAGGCCAAAAATAACTTTCTGAATACTTTTTCTTCTGTACAAGTGGAAAGGGAATTTTTCACATCTAAGTGGGCTATTGTTTTCAAAAGAACTTTATCATTGTGCAACTAACAATAACTAGCCCTGACTATGTGACAGTTCCCTGTTGATGTGTGCAATTACTCTAGCGGCTTCTACAGTCTTAACACAGTTGAATGATCCCCACATCCTGTCACCCAGATCATTTATAGGTCTATTAACTGTGAGATTGATAAAGTATTACTGATTTAAAAAAATAAGAGTATCTAAGAAAAAAAAAAAACAGAAAATTATTTGGTGTGGCCATCCAACATGCTTATGTCTTATACAGAATGCTAATCCCCTGGCAGTGGTGTAATGAGAGGTCACACCTTACTGTGATGTGTGTGTGCTCTGGTGCACAGATGTCATTTTGTTGTCACAGCACTACAGTGAGATACAGAATAAACACTTAAATTCATGTAATGACTTACTTGTGTTATGTGGTAGGCTTGATGGTGACAACTTTTGCTTGATCTGCTACTTGCGCTTCGGTAAAACTGCATTCATATATACTATGTGTATATGTGTTACTCCTGACAAGGGCGTGGTGGCTGACCTCATAATCCTAACATTTTTAGGTTTCACCACCATATTGGTTCATTTTTCTAAGGTTGGAACCCTTCCCCATATGAAAGAATACAAGACTGGCATTTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201:ENSMUST00000122941:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.476
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=PD(8.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types