Special

MmuINT0180127 @ mm9

Intron Retention

Gene
ENSMUSG00000079509 | Zfx
Description
zinc finger protein X-linked [Source:MGI Symbol;Acc:MGI:99211]
Coordinates
chrX:91326059-91326825:-
Coord C1 exon
chrX:91326676-91326825
Coord A exon
chrX:91326200-91326675
Coord C2 exon
chrX:91326059-91326199
Length
476 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TTTTTAATACACATTGTTAGGTA
3' ss Score
4.93
Exon sequences
Seq C1 exon
ATGTCGCTGAGATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGATGCTGCAGCTGCAGCCGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATGCCGATTGCATGGGCAGCTGCTTACG
Seq A exon
GTAAGTCACAGAGCCACTCTTTGGACATGAATTTGTGATTGAAAAGCAGTTTTTGTGATTTTAGGTTTAGAAATCGGAAATGTTAGTACTATATAAGGATTATTTGATTTAAACAAGAGCAGAGGAGGATTATAAAACTACTTTTTGTCCTGATTTTAAACAAGCATTTCCTCCTGTTTACATTATATAAGGAAATAAACTGTATGAAGCATACAGGCTTTTAACTGTATCAGGTCCATAGCTTTAAAATCTTGGGGGATAGCATGGGACCCCTGGGGGAAAATTCTGATGCATGTTTCCATTTTGGAAGCTAGGCATTTCCAGTGGTCTTACTATAATGAGTATGCTCATAAAACTTGGGTATTTTTGTCATTCATGAGTATCATGGCTTTTCATTGTGGGAGTTAATAAAGAATTCCTAATTCTTTATAATTTATAATACTGTATGATTTTGTTTTTTTAATACACATTGTTAG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAGACCTGATTCCAGGCAGTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079509-Zfx:NM_011768:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.196 A=NA C2=0.635
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)

							
A:
NA

							
C2:
PF047048=Zfx_Zfy_act=PD(13.4=93.8),PF054436=ROS_MUCR=PU(35.5=56.2)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000085423





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000109559, ENSMUSP00000109560, ENSMUSP00000132179
  



Associated events






Conservation


Human
(hg38)
chrX:24208371-24208899 
LOW PSI
HsaINT0185640
(ZFX)
Human
(hg19)
chrX:24226488-24227016 
ALTERNATIVE
HsaINT0185640
(ZFX)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chrX:126151135-126151663 
LOW PSI
BtaINT0164460
(ZFX)
Chicken
(galGal4)
chr1:117632395-117634705 
ALTERNATIVE
GgaINT0111617
([1])
Chicken
(galGal3)
chr1:121644634-121646945 
LOW PSI
GgaINT0111617
([2])
Zebrafish
(danRer10)
chr14:11676248-11676674 
ALTERNATIVE
DreINT0181637
(znf711)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTCGCTGAGATTGCTGATGA

				
R: 
TGTTTGGTACTGCCTGGAATCA

				
Band lengths: 
289-765

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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