GgaINT0111617 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQX8]
Coordinates
chr1:117632254-117634840:-
Coord C1 exon
chr1:117634706-117634840
Coord A exon
chr1:117632395-117634705
Coord C2 exon
chr1:117632254-117632394
Length
2311 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTTTAAACTTGCTTTGTTAGGTA
3' ss Score
7.64
Exon sequences
Seq C1 exon
ATGTTGCAGAAATAGCCGATGAGGTTTATATGGAAGTGATAGTAGGGGAGGAAGATGCAGCAGTCGCCCATGAACAGCAAATTGATGACAATGAGATTAAAACTTTCATGCCAATAGCATGGGCAGCAGCTTATG
Seq A exon
GTAAGTAATATTCACAGAATTCTTCCTGGTGACACTACAAGAAAATACTGGGTTCGTTTTTGGAGAACAGTGGAGTGTCTGTGCTTTTGTGCTTGTTTTAGTCTAAGAATCGTTTCTGAGCATAACGAGGCTTAAAATTAAAAAGAGAAGAAGAGAGAAGCTGTAAAACAGGCTTCTTTCTGTTCCTGTTTTATCAGACCTTTTCCTTCATGTTGTCATGATGTGGAAGGGGAAGCGCAGAACCTTTCAGTTGAAAAATTGCATCTCAAGTGCATTTGTCTGTCACAGTTTTAGTATACATTCATTGGGAATAGGACTCTGAATATTTTGTTTTGGGGAGAAAAAAACAGATGGGAATATGTAAGATTCAGCGTAACCATGAAGAGCATTGCTGGCCTCTAGCTTGATTTAAGTGTCTTCTGAAAGGAACATATAAATATGTGATTTCACAAATGGAAATAACTAATTAACAAAAAAGACGCTGGAGGGATACATCTTAAAAAATTAAAAACAGAACCTTGAGAATATTTATTGAACATTAGTATCTGAGCACCAGCTGGTGCTTAAACTGATTTCCAGAACTTACATAGCCTGGTAGAGCAAAATCTCATCTTAGGAATTTTTCTTTGTTGCTCCCATCCTCCTCCTGAATGTACTTTGAGTAGAGGAAGCAGAAGAAATAGTGGAGTAGAGGACAAAACTTAGGTTATGCATCTGCATGATGTGAATTTCGGTGATGCTGTCAGTAAACTACTGACAGGGAAGTGCTGAGAATGCAACACAGGGCTGGAATCATGGTTGTAAGTCAAGTGAGGGCAAGATTTCAGGGAGCAGTGTGTGGTGAAAAGTGCTTAGGAGGTGGGTGGTAACGCACCCAGAGCCTTACCTTTGGCTGAATGTTGTTGAGCATAGTTTCAGCGCAGAGGAAAGGACAGAAGTCAGGTTGAGTGGGAATTCAAAGTGAAATTAAGTGAACTCAGGAACAGTTGTAGACAGAACGCTCAGTGATTGTGGAAAAGGAGGATAAAATTGAGCACACTGCTAAGAACACAGAGGTGGAATTTAAAATGGAGTTAAGAACATAGGAAACAGTAGAGTGATTGTGTCATCAGCAGTAAGCAACCTAACATGCAACTTGAGAGGTGGTGGGGAAGGGAAGAAATAATGACACATGAAGGCATGAGAATGGCTGAGGTTTGTCATTTGCACTTCGCAGAGCTCTTCTCCCCTTCAAGAGGTATTAAAAGTTGACAACAAATGGGATCTTACAATGGCACACCTGTTTCGTTGCTGTATCATAGCAAGTCCCTATTCTTCTATGTATTATATTCCAAAAGCTCTACACTTCTATTCTAGTATTAGAAAAGTGTTCAAGGCTTTCTTTTTTGTGTGTTACCATCTGGAAGGACTCTTCATACACCTATTGCAAACTGTACTGTCTGTGTGTAAGATGTGACACTTTTTTGCTTTCACCGGTTACATCACTTGCTACGTTCGCAGTTCACCACTTGAGCTAGCAGATAGATCAGAATCTTCAGGCCCTGCCCATGGCTGTTACTGGTTCTGGTTCTTTTTGCATGAATATTCATTCACAGCACTCTACAAAGAGAACAGCTATTGAGCATCTTATGCTGTCTCCCACTTTAGTCTTTCCGTCTTGTTTGCGTGCTCTTCTTTTAAATACAGAGCTCTGTGAGGCAAAGGTTGTTTTCTCTGTGTTACACGTGCTCTCTGTTCCCAGTGGGAATAGTTTGTGTTAAAATACAGGGGTGTGCAAGGAGTGTGTAGTGTACTTTGTGTGTGAGTTTATGCGCTGTTCAGAACAATTGACTGATCACAGTTCCTGTTTTGAAACTTAGTTTGGAAACTTTAGTGAGGTGAATTCAGATGCCCAGAAGTGAATGAGAGCACACGTGGATGTATTTCAGGGCTGCTGAAGACCATCAGGCACAGTAAACTTTGTGACCTGTTTTTGTTTACTGATGTTAAACATCTGGGGTGTAATTGGTAGACAAAGAAATGCAAACTGTGCACTTAAACTCTTTGTGAAATGGAAAGCCATTTACTCCTATAAATTGTGTAGTCCTGTAAAATGAGTTTTATGCAGCCAAGGTTGATGTCATCGTACCAAGCATAGTTCATCAGTTACATACAGAGCAGTTTTTTAACTCATCCTATATGTTAGAATGGTTTAATTAAATGTCAAAACAATAGTTTATCTTTTTTTTTTTTTAATTAGCGTGATGGAGTTTGTTGCTCAAATAATCTGCGGTGTGGTGGCAGGAGGTAACTTTTAAACTTGCTTTGTTAG
Seq C2 exon
GTAATAATAACGATGGCATTGAAAGCCGGAATGGCACTGCAAGTGCTCTTTTGCACATAGATGAGTCAGCGGGACTTGGGAGACTGGCAAAGCAAAAACCAAAGAAGAAAAGGAGGCCTGAGTCCAGGCAGTATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016327:ENSGALT00000026338:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.604
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(13.7=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.7=93.8),PF054436=ROS_MUCR=PU(41.2=72.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]