MmuINT1035824 @ mm10
Intron Retention
Gene
ENSMUSG00000079509 | Zfx
Description
zinc finger protein X-linked [Source:MGI Symbol;Acc:MGI:99211]
Coordinates
chrX:94080720-94081486:-
Coord C1 exon
chrX:94081337-94081486
Coord A exon
chrX:94080861-94081336
Coord C2 exon
chrX:94080720-94080860
Length
476 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TTTTTAATACACATTGTTAGGTA
3' ss Score
4.93
Exon sequences
Seq C1 exon
ATGTCGCTGAGATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGATGCTGCAGCTGCAGCCGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATGCCGATTGCATGGGCAGCTGCTTACG
Seq A exon
GTAAGTCACAGAGCCACTCTTTGGACATGAATTTGTGATTGAAAAGCAGTTTTTGTGATTTTAGGTTTAGAAATCGGAAATGTTAGTACTATATAAGGATTATTTGATTTAAACAAGAGCAGAGGAGGATTATAAAACTACTTTTTGTCCTGATTTTAAACAAGCATTTCCTCCTGTTTACATTATATAAGGAAATAAACTGTATGAAGCATACAGGCTTTTAACTGTATCAGGTCCATAGCTTTAAAATCTTGGGGGATAGCATGGGACCCCTGGGGGAAAATTCTGATGCATGTTTCCATTTTGGAAGCTAGGCATTTCCAGTGGTCTTACTATAATGAGTATGCTCATAAAACTTGGGTATTTTTGTCATTCATGAGTATCATGGCTTTTCATTGTGGGAGTTAATAAAGAATTCCTAATTCTTTATAATTTATAATACTGTATGATTTTGTTTTTTTAATACACATTGTTAG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAGACCTGATTCCAGGCAGTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079509:ENSMUST00000088102:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.646
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.4=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGCTGAGATTGCTGATGA
R:
TGTTTGGTACTGCCTGGAATCA
Band lengths:
289-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types