BtaINT0164460 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007730 | ZFX
Description
Bos taurus zinc finger protein, X-linked (ZFX), mRNA. [Source:RefSeq mRNA;Acc:NM_177490]
Coordinates
chrX:126150994-126151816:-
Coord C1 exon
chrX:126151664-126151816
Coord A exon
chrX:126151135-126151663
Coord C2 exon
chrX:126150994-126151134
Length
529 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TTTTTAATGCACATTGTTAGGTA
3' ss Score
4.65
Exon sequences
Seq C1 exon
ATGTTGCTGAAATTGCAGATGAAGTTTATATGGAAGTGATTGTAGGAGAGGAGGATGCTGCTGCCGCTGCAGCAGCCGCTGCCGCCCATGAGCAGCAGATGGATGACAACGAAATCAAAACCTTCATGCCGATAGCATGGGCAGCAGCTTACG
Seq A exon
GTAAGTCCTGTTGCAGCTCTTGGGATTGAGTTGGTTCTTGAACGTGAATTCATGATTAAAAACAGTTTCTGTGGTCTTATGTTTCACAAATCTGAAATACCAGCATCCTGTAAGGGTTATTTGATTTGAATAAGAATAGAGGAAGATTATAAAGTCTACTTTTTGTCTTTATTTTTAAGGAATTTCCTTCATGTGTATATCATGTAGAAGGAAGTAGTGCAAGAAGTACACAAGCTTTCAAGCTGAAACTTTGCATCTTGATTATATGTGGCCCATGACTTTACAGTTTGGGGAGACAACAAGAGAGTCCATGGGGCAAAATGCTGACATATGTTTTTTAGATATGGAAGCTAGGCATTTCTTACAGTCTTGCTATAATAGATGTGGTCATAAAACCCATTACCTAGAATGGGGAATTTCCGTCATTCATGAGTATCATGGCTTATTTTCGTTGTTATAGTTAATAGAGTCCCTAATTCTTTATAATTTATAATACTTTATAATTTTGTTTTTTAATGCACATTGTTAG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGGCTTGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAGACCTGATTCCAGGCAGTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007730:ENSBTAT00000010165:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.2=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.4=93.8),PF054436=ROS_MUCR=PU(34.7=54.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCTGAAATTGCAGATGAAGT
R:
CTGTTTGGTACTGCCTGGAATCA
Band lengths:
294-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]