RnoINT0168834 @ rn6
Intron Retention
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63164472-63165274:-
Coord C1 exon
chrX:63165125-63165274
Coord A exon
chrX:63164613-63165124
Coord C2 exon
chrX:63164472-63164612
Length
512 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TTTTTAATACACATTGTTAGGTA
3' ss Score
4.93
Exon sequences
Seq C1 exon
ATGTTGCTGAAATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGATGCTGCAGCCGCAGCTGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATGCCGATTGCGTGGGCAGCTGCTTACG
Seq A exon
GTAAGTCATAGAGCCGCTCTTTGGACATAAATTTGTGATTGAAAAATAGCTTTTGTGGTTTTAGTTTTTAGAAATCTAAAATGTTAATACTATTGTATAAGGATTATTTGATTGAAACAACAGTAGGGGGGAGGATTATAAAGCCTGTTTTTTGTCCTGACTTTAAACAGGCATTTCCTCCTGTCTACATGATATAGAAAGAATATACCGTATGAAGTATACAGGCTTCCAAGCTGGAATGTTTCAGCTTAACTGTATCAGGTCCATGGCTTTAAAATTTTAGGACATAGCCTGGGACCCTTGGGGGAAAATTCTGACACATGTTTTAGTTTTGGAAGGTAGGCATTTTCAGTGGTCTTACTATAATGAGTGTGCTCATAAAACTCTAGAGTGGGGTATATCTGTCATTCATGAGTATCATGGCTTTTCATTGTTGTAGTTAATAAACAATTCCTAATTCTTTATAATTTATAATACTGTATGATTTTGTTTTTTTTAATACACATTGTTAG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAGACCTGATTCCAGGCAGTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624:ENSRNOT00000065194:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=NA C2=0.639
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.4=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCTGAAATTGCTGATGAAGT
R:
TGTTTGGTACTGCCTGGAATCA
Band lengths:
289-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]