MmuINT0180344 @ mm9
Intron Retention
Gene
ENSMUSG00000020472 | Zkscan17
Description
zinc finger with KRAB and SCAN domains 17 [Source:MGI Symbol;Acc:MGI:2679270]
Coordinates
chr11:59307217-59313122:-
Coord C1 exon
chr11:59313046-59313122
Coord A exon
chr11:59307350-59313045
Coord C2 exon
chr11:59307217-59307349
Length
5696 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CAGCCCTGCTCTACTTTCAGAAC
3' ss Score
8.19
Exon sequences
Seq C1 exon
TTCCGCAAGATGCGTTCGTTGTGCAGGAGCAGAGCATCAGGGATGCCCAGCCCGTGGCCACCTGCCAGCTTCCCCCG
Seq A exon
GTGAGTGATTACCAAAAGCTGATCTCTAAGGTGCCCCATGGGATAGTTTTCTAGGACTCGGGCCTGCCTGCTCTTTGCCACAGCATGTAGCCTTAGCCCAAAGAACCAAGGTGAACAGGGAACCAATGGGCTTAAAGATGCCCATTGCTTCTGCTGTTTCCTGAAGCTCAAAGTGCTGCTTGCCCGCCCACTTTAGAAAACTGCAGATGTACATAGAAAGCCACTGGAGGAGACTTCTCTCCTTTTCTGAGTTCCTTCAGTGGAAGGGAGAAACCACAGCTCCTTACTTCTCAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGCTTTAATGAGGCCATCTTCTCATTAGTAGCTGCATTTCAGGAAGAGAGCATAGTGGTTGCTGCACCGTTACATGACCAGGTGTATGTCACATGGGGCTTCCATGGTGTGCCCTGTCTGTGTTCCCGGTCCAAGTTTGCTTCAGTGTCCTTGGTGGGAGTGGGTGGGGTCGGTGGGTGGGGTCGGGGGGTGGGGTTCAGAGTGGGCACAGCTGGGATCTGGTCTCACGAGTGGCACACTTATTTATTTCCTTCCTTCATCTGACTGCCTAGGTTTTCAACAGACCTCTTAGCTTTCCCCTTTCTGCTGCCCTGCATGATGCTACACTGTAAAACACACACACACACACACACACACACACACACACACACACACACTGTGGGCTTTGCAGAGTATAGGACTGCCCCAGTAGAAGACTGTTCAGAAGAGGCAAAAAGGAACAACCCCATCTCCAGAATGCTTAGAGCGATTTGAAGTGGGTATTGAAAAATTCGCATACATAAAATGAGGACTTGGGATAAGACCCAAGTTTACACAGGTAATTCATTTGTTTCATATATATCTCATATGCAGATGAAGGTTATTTTGTGCTGTTTGTTTTTAAGAGTTAGTTGTTTATTTGTGTCTGCTGCTTACTTTCTGCCACCAGTCACTGACTTTGAGGCTAGCTTGGCCCCTCCCTTTCTCTCTGTAGCATCACTTCCTGTGCTGTGGCCTGAATGTTTGGTCATTTTCCCCACCCCCAACTCTCTCCATTTTTTTTTTTTTTTTGAGAGTTACAGGAGGGAGCTTTGGGGAGGTCATAGCGCAGAGTCCTCTAAATGAATTGGTGCTTTCATAAATAGGCTTGCTTGGTTGGTAAAGTTGTCTTGCTAGCATGAGGACCTGAACTCATCCCCCAGAACCCACATAAAAGCCAGGCTAGTAGCACACATTTAGTCCCAGTACTGGGGAGGCAGAACCAGGTAGATCCTGGGCTCCCCCTGCCGACTTGGTGACTTTCAGGCCAGAGAGCGACCTCCATCTACCACAGATGGCAAAAACTCTAAAGCTAGATGGGAATAAGGCCTGAAGTTATGCGTGTGGAGGTTCCTGTATTCACGGCCACACATGCCAATGTGTGTGCATGTACGGGCTAGAGAGGTGGCCCAGCAGTTAAGGCACTGGCTGCTCTTCTGGAGGACCTGGATTTGATTCCCTGCACCCCTGTGGCAGCTCACAGCTATTTGTAACTCCATTTCCGTGGTATTCAGCGCCCTCTTCTGGCCTTCTGAGGCACCAGCTGCTCAAGCAGTACACAAGACATACAGGTAAAGCAACCATATACATAAATTTTTAAATCCTTTTAATGTTTTAAAAGAACAAGGAGGTGGCACTATACCGATGGGAGCTGATGGTGGAGGGCTTTGACACATTCCCAGAGCCACCACGGACAGACAGCAACTGGAAAGTGTCTATAGGACCAGAGACCAAGGAATCCATGAGGTTTTGGGAGTAGGAAAATTTCAGGTTGTTCACACTGAACCTTCACTGGTTGTAGATGACCGCACAGGACAGGACAGAAACTGTCAAAGGGGAAGGAGGCCAGTCTAAGAACAAAAGAGTTTGGGGTTTGTTTGTTGTTTGTTTCTTTCTTTGTTTTTTCCCTTCTTTTGGGACTGATTTGAACACTGTAGCCCAGGCTAGCCTTGCACTCATGGCAGTCTTCCTGCCTCGGGCTCCCAGGTGCCAGTAGGATTATATAGTGAAGGCGTGTGGCACCATGTCTACCTCCTAAGTCTTGCTCCTTCTCGGCTGATTGTTTTCAAAAAGCAGACTCCACTGTGGCCTTGAGAGACCCTCAGCAGAGGAAAACAACATGGGGCAGATGGGTTTATTTTCCTCTGCTGGCTTAGCCTGAAACTGAGTTAGAAATGACCCAGTCTCTCTCCCTTCTCTAGCCTAGGACTTAGAACATCTCAGAATTTTTTTCTACCATTTCCTCTTTATTTTTAAAGGTTTATTTTGTATGTATGAATGTATACCACGTGGTTGTGAGTCACCATGTGGGTCCCCTGTAAAAGCAAGTATTCTTAACTGCTAAGCCCTCTCTCCAGCCCCCTCCTTGTTTTCCACAGGACTTTTCCAGAGAAAGCCTCCCAGGTGACTACTGTATTTTACTATGTGTGTTTAAAATCATCTTGTGTTCAGTCTCATCCTCTTTGGGGAAGGCTCAGTCCTAGGAAGTTGTTTTCTATAAAGGAAGGAGGTGGACAGACCAGATCTGTGATATGTCCTTTCACCTCGTTGCCACAGTGGTAGGAGACAGAGAAAGGGGAAGGAGAATATCCTGACACCGTGAGGCCTGGTCTGTATTTTTAGAAGTAGCTTGTTTTGGAAAAGTGTAGGCAGGTGGTTGAGTTTTTTTGAGCCAGCATAATGTGGTTGGAATTTGCTCTGCCAATTTACATAGTTGGGAGAGATAAAACGTTCAGCACTGGGTTAGAGAGGTGGCTCGGCGGGTGAGAGCACTGACTGCTCACCCAGAGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATCATCAGTAATGGGATCTGATGCCCTGTTCTGGTGTGTCTGACGACAGCGACAGTGTACTTATACACATAAACTAAATAAACTTAAAAAAAAATGTTCAGCACTTAGAGGGTGTAACAGTCAAAGGACTACAACATACAACTGTTAAGCCAGCCTATAATAGTTGTTATTGCTTTTTCTGAACAATGAAAATATTTAGTAATGAACTAAACATTCACTACCAGACTAAGTCTGGGGAAGTCCGAGAGGCCTGGGGGAGCTGGGTGGCTTCTTGTCTAACATTTTCCACGTGGATCTTTGTTCCCACACAGCAAGATACTCATCCAGTCCACCCACCTCCTTACTCTGTCACTGTGCACTGCAAGGCAGGTCCATTGTTTAGTTACTGCTTTCACGTTGGACTGTGGTGAAGAGTCCCCCATAAGCAAGCTGGTGGCATCAGAAGCAGCACCGCCATTGCAGGGCTTCCAGAGAAGCTCAGGGCTCCTCCTGCTCCTGGTAAACACTTGGAAGAATTTGGCCAAAGAGAGCCCCCAACAGAAAAGTAATTGCTTTGATCTAAGAAGGGTTTGAGGTGAGCACTGTTGGTGTCTCTGAGTCAGTATGGATACAGGCACACTGTCTCTTGTGAGCCATCTTGGATTGTGTCTCAGGGCCCATGGGTGGCCGCTTTCTCCCCAAGCACCACGGGTTTAGCGTGTTGTGTATGACTTGATGGTGATTAAGCCTGGGTCAGTCCTACAGCATCCAGGTTTGTCTGGACCTTCATCTTAGTTCGTTATAGGCTTAGTCCATTGAGGCGTCTTTTGTTTTTCGTTCAGTGTCTGCCTGTGTGATAATATTGTAGTTAATTTGAGGGTGTAGCAAGCATGTGAGTGAGTGAGTGGCCTGGATTGACTAGAGCTACTGGTTGGCTAGGCAGAAGGTGTGAGGTTGGTTTTGACTGGTGGTCCCTCCGAGGAGGAGGAGGAGGTGCCTCGCATGGCACCGTGAAAGCTTTGCAGATGGATGGCAGGCTAAGCAGTCAGCTCTCTGTGTCAGGGCAGAAGGGACAAGAATAAGAGCCCATAAGCACCTCAGCAACCTGCATGGTAGCACACGCCTTTACTCCACACAGCCCTGCATGGTAGCACACGCCTTTACTCCAAGTACTTGGGAGACTGAGGCAGGCAGGTGAATTCTGGTCTATACAGTGAGACCTTGTCTCGAACAACAGCAAAACCAAAAGGCTGGAGAAATGGCTCAGGGGTTAGGGGTACTGGCTGCTCTTACAGAGGACCTGGGTTCAATTACTAACATCTATCTACATGGCCACTTCAACTGCCTGTTAACACCAGTCCCAAGAGATCGGATGCCCTTTTTTGGCCTCAATAGGAACTGCATGCATATGGGGCGCAGACATATATGCAGGCAGACCACCCATACAACATAAATAAATCTTTTTTAAAAATTTAATTAAACCTTTTCTTTTTAGTAGCTTAAAATAACAATCTAAAACACAAGGACATTAACTGGCTTATGCAGCAAAATCAAAAAATACTCTCAAGAACAAAATTAGTGTCGAGACTGTACAGGAATCAGGGTGTCCAGCAGGAATTAGCAGTTCAAGGGGCTGGAGACAGCTCAGCAGTTAAGAGCACTTGTTGCTCTTGCAGAGAACTTGGGTATAGTTCCCAATATTCCCATAGTTACCATCTGTAACCAGTTCCAGAGGGGCTCATGGCTTCTTTTGACCTTTGAGGGCACCAGGCACTCACATGGTACAGATATATACATTCAGGCAACACAGTCATACACAAAAAAAGAAATCTTCTTTTTAAAAAAAATTATTAAAAATAATCAGCAGCTTATGACTTAGCCAGACCCTTGAGCAAAAGTCCATCTCCAGCCAGCACTAGCTCTCTGCTCAGAAAGAAGCAGAGCCATACTCGGTCGGCCCAGTGACAGGTGACATCCATCAGGTGGGAGAGTGGATTGCTCCTTTTGGTTTGGCCACAAGAGTCCTCACCAAGGATCCTGGTCCTCTCCAGGGTCTCAAGCACTTTCTTCTGAGCTCTGTTCCCAGTAAATGAAACCACCAACCTGGGCTTAGGTAGCTCACTCTCCTTGGTCCAGTACAAAAGGTGGTTTACCAAAGATGGTTCCTCCCTTAACAGCCTTAGTAAGTTCTTGGCAACACCTACAAATACCCTTTTCAGAAGCTAAAGAAGCTCGGGCCCCAGGGGAGGATGTTCAAACATCTGTGCTTCCCAAAGGGATGTATCTGAAATTGCAAAGAACTGAAAGTCAGGCTCTAGGCCAGGCAAGGTTGTAAGTTCCCATAAATTTAGCGGAGGCTCAATTTCATTTGTTCTTTCTACCAACCCAGAGGCCTAGAAGTGTAGGCACGGTGAGAATGTAATGATACTGGGTAGAACCTGGAAAGCCCCTTCCACCATGGTCTTTTTTGGGTTTTTGAGACAAGGTTTCTCTGTGTAGTCCTGACTGTTCTGGAACTCACTCTGTAAACCAGGCTGGCCTCAAACTTATGTAGCTCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAAGTGTGCCACCACTGCTCAGGAAGGGCACCAAACCCAAAGAAGCAGGCTCTTTCCACACTCTGCCCTGCCCTGACTTGATTTCTTGCCTCTGAAGTCATTAGGCATAAGTGCCTGTGTTACATGCCACCTGGCCGTGGTATCCCACCATCAGCTAATACTCAGGAAGGCCCTGCTCCTCCTCAGCTGACACAGCCCTGCTCTACTTTCAG
Seq C2 exon
AACCGAGTCTCCCCATTTAAGGACATGATTTTATGCTTCTCAGAAGAGGACTGGTCCCTTCTGGACCCGGCACAGACTGGTTTCTATGGCGAATTCATCATTGGGGAAGACTATGCAGTCTCCATGCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020472-Zkscan17:NM_001130529:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.232
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=73.3)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: