RnoINT0168285 @ rn6
Intron Retention
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45840158-45845625:-
Coord C1 exon
chr10:45845549-45845625
Coord A exon
chr10:45840291-45845548
Coord C2 exon
chr10:45840158-45840290
Length
5258 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
AGCCTGCTCTGTGCTTTCAGAAC
3' ss Score
8.73
Exon sequences
Seq C1 exon
TTCCGCAAGATGCTGTCCTTTCTCAGGAGCAGAGCGTCAGGGATGCCCAGCCGGTGACCACCTGCCAGCTTCCCCCG
Seq A exon
GTGAGTGATTACCAAAAGCTGATCTCTGATCTACCCCACTGGTCAGTTTTCTAGGACTCTGACCCACTCCCTGTCTGCCATGGATGTAGCCTTAGCTCAAAGAACCAAGGTAAGCAGGACTGGGTTTAAAGACGCCCATTGCTTCTGCTGGTTCTTGCAGCTCCAAATGCTGCTTGCCAGCCCACCAAGGAAACTCTGCACATGTACTTCGCTCCTTTTCTAGATTCCCCCAGTGGAAAGGAACTGCACAAGGAGTGTTTTAATGAGGCAGTCTTCTCATTAGCAGCTACATTCCAGAAAGACAGCATAGCAATTGCAGCACCATTACATGATGTCCCATGGTGTGTGTCCTGTCTGTGTTCCTGGTCCCGGTTGGCTTCAGTGTCCTTGGTGGTGGGGCCGGTGTTCAGAGTGGGTGCGGCTGGGATCTGGTCTCAGGTGGAGGCTCATCTCCTTCCTTCACCTGTCTGCGTAGGTTTCCAACCGGTCTCTGAGCTTTCCCCTTCCATTGCTCTTTCTACTGCCCTGCATGATGCTACAATGTGAACACACACACACACACACACACACACACACACACACACACACACAGAGTGTGGGCTCCACAGGGCATAGGACTGCTGCTGCAGTAGAAGAATGTTGAGAAGAGATGTGAGGAGACAGCCCCTCTCCAGAATGCTTAGGGCTGTTGGGTTTGAAGTGGGTATTGAAAAATTCGCATATGTAAAATGAGAACTTGGGATAAGACCCAAGTTTACACATGTAATTCATTTGTTTCATATATATCTTAAATGCAGATGTAAGCTATTTTATGCTGTTTGTTTTAAGAGTTGTTTGTGTCTGCACCATGCTCCCTGACATTAGTCACTGATTTGAGGCTAGTTTGGGCTGGACTTCTAGCTACAGACCTAGCTTGGACCCTACCTTTCTCTTTGTAGCATCATTTCTTGTGCTGTGGCCTAAATGTTTGGTCATTCACCCCATCCACACACCCCTTCCCCCCATTTTTTTGGAGAGTGTAGGAGGGAGCTTTGGGGAGGCAGGGAGGTCATAAACACGAGTCCTCTAAGTGAGTCGGTGCTTTCATAAGAACAGTTGGCTCAGCTGGTAAAGTTGTCTTGCTAGTGTGAGGATCTGGACTCAGCCCCCAGAACCCACATAAAAGCCAGGCCCAGTAGCACACACTTGATCCCAGGACTGGGGAGGCAGAAACAGGTAGATCCCTGGGCTCCCCCAGCCCACTTGGTGATTTCTAGGCCAGTGAGAGGCTTCTGTCTACCACAGGTGACAAAAACTGAAAGCTAGGTGGGGATAATACCTGAATTTTCCTTGTGAATATCCCTGTATTCACACCCACACGGAAGCAAGTGTGTGTGTATATGCATGCATACAAATAGGCCTCGGAGCCTTGTCTTGTCCATTCTACCTCAGAATGGCCCAGTGAAAGGCCTAGACAGTCGAGGAGGGGCTGGAGAGGTGACTCAGCAGTTAAGGCCACTGGTTGCTCTTCTGGAAGACCTGGGTTTGATTCCCTGCTCCCAGGTGGCAGCTCACAGCTATTTAACTCCATTTCTGTGGTGTTTGGCACCCTCTTCTGACATTCTTAGGCACCAGATGCTCAAGCAGTTTTAAAAGAACAAGGAGGTGGCACTGTACAGAGGGGAGCTGACGATGGAGGGCTGTGAGGGCTGTGACACATTCCCAGAGCCACTGCAGACAGGCAGCAACTAGAATGTGTCCATAGGACTTGAGGCCAAGGAATTCCATGAGGTTTTGGGAATAGGGAAGAGATTGTTCATACTAAAACTTCACTGGTTGTAGATGACAGGACAGAAACTGTCAAAGGAGAAGGTGGCTAGTCCAAGAACAAAGGGGTCTTTCTTTTTTCGGGACAGATTAGCACACTGTAGCCCAGGCTAGCCTTGCACTCACGGCAGTCTTTCTGCCTCCAGCTCCCGAGAATAGTAGGATTATAGGGTGAAGGTGTGGTACCATGTCTGCCTCCTAAGCCTTGCTCCTCCTCAGACTCTACTGTGGCCTTCAGAGAGCTTCAGCGGAGGAAAGTAACGTGGAGCACATTGGTTTATTTTCCTCTGCTGGGTTAGCCTGAAACTGAGTAAGAAATGACTCAATCTCTCTCCTTCCTCTGGCCTAGGACTTAGAACAGCTCGGAATTTTTTTCTACCATTTCCTCTTCTTTGAAAAGGTTTATTTTGTGTGTATGAATGTGTACCACATGGATGTGAGCCACCATGTGGGTGATGGGAATCAAATCCCGGGTCCTCTGTAAAAGCAACAAGTATTCTTAACTGCTGAGCCATCTCTCCAGCCCCTCCCTGTTTCCCACTGGACTCTTTCAGAGAAAGCCTCTTAGGTGACTGACGGCTGTATTTACCCTGCCTTAGGTAATCTTGTGTTCAGTCTCACCCCCTTTGGGGGAGGCTCATTCCTATGAAGTTGTCCTCGATAAAGGAGGGAGGCTGATAGACCAGACCTATGACATGTCCTTTAGTCCCATTGCCACAGTGGTAGGAGAGAGACAGGGGAAGGAGACTATCCAGTCACTGTGAGGCCTGCTCTGTATTTTTACAAGTTTGCTTTGGAAAGGTGTAGGCAGATTGTTCAGTGTTTTGAGCCAGCATAATATGGCTGGAATTTGGTCTGCTAGTTTATATAGTTGGGAGAGAGAAAACATTTAGCATTTAGAGATGGTAACAGTCAAAGGACTATAACATAGAACTGTTAAGCCAGCCTATAATAGTTGTTTTTGTTTTTCTGAACAATGAAAATATTTAGTAATGAACTAAAGGTCACTAACAGACTAAGTCTGGGTAAGTCCATGAGACCTGAGAGTACTGGGTGGTTTCTTGTCTAATATTTTCCATATGGGTCCTTGTTACCCACACAACAAGATACTCAGCCAGTCAACACACCTTATTCTGTTACTCTGCTGTTTAGCCACTGTTTTCACATTGTGCTGTAGTGAAGAGGCTGCCCCTTAAGCATGTGTTGGCATGAGAAGTAGCACCACCATTGCAAAGGGCTCTTCCAAAGGAGCTCAGGGCTCCTCCTGTTCCTGGTAAAATACTTGGAAGACTTTGGCCAAAGAGAGCCCTCACAGAAAATTAATTGCTCTGATCTAAGAAGGGCGTGAGGTGAGTAGGGTTGGTTTCTCTGAGTCAGTATGGATACAGGAGCACTGTTTCTCAGGAGCCATCTTGTATTGTGTCTCAGGGCCCATGCGTGGCCTTTTTCTCCCAAGCACCACAGGTCTGGCATATTTGTACGACTTGATGGTGATTAAGCCACAGCTGAGTACTACAGCATCCGGGTTAGTCCTTATGGGCTCAGTCCATTGAGGCATTTTTTGTTTTTAGTTCAGCGTCTGTCTGTTTGATAATATTGTGGTGAATTTTGAGGTGTAGCAGGCGTGTAAGTATGGGCACCCGGCATGGACTAACTGGAGCTACCAGTTGGCTGGGCAGAAGATGTGAGGTTGGGTCCAGCCTCTCTTGGTTTTGACTGTGGTCCTTCTGAGGAGGAGTTGGCTACAGTGAGAGCTTTGCAGATGGATAGCAGACTAAGCAATCAGCTCTCTGTCTGGGCAAAAGGGGCAAGAATACCAGTCCATAAAAACCAACAATCCAACATGGTGGCACACACCTTTATTCCAAGTACTTGGGAGACTGAGGGCAGGCAAGCGAATTGTTTTATACAGTGAGACCTGCCTCAAACAACAACAAAAAGCCAAAAGGCTGGAGAAATGGCTCAGTGGTTAGGGATACTGGCTGCTCTTCCAGAGGGCCTGGGTTCAATTGCTAACATCTACATGGCCATGTCAACGGTCGGTTAACACCAATCCCAAGAGTTCTGATGCCATCTTCTGACCTCAGTAGGAACTAAATGCATATAGTGCACAGACAGGCATGATGCAGGCAGACCACCCGTACAGCATAATTTTTAAAAAAATTTTAATTAAATCTCTTAGTAGCTTAAAATAACAATCTAAACCACAAGGACACAAACTGGCTTTATGCAGCATAATCAAAATCAAAAATACCCTCAAGAGCAAAATTAGTGTAGTGACTGTGCAGGAAGCAAAGGGTGTCCAGCGGCAACTGGCAGTTCAAGGGGCTGGAGAGATGGCTCAGAAGTTAAGAACACTTGTTGCTCTTGCAGAGGACTTGGGTGTAATTCCAAACATTCCCACGGTTACCAGCTGTAACCAGTTCCAGGGGATCTCCTGGCTTCTTTTGACCTTTGAGGGCACCAGGCATATATTCAGGCAACAGTCATACACATAAAAAAATCCTTTTTAAAAAAATTATTAAAAGGAATTGGCAGCATATGACTTAGCCAGACCCTTGAGCAAAAGCCTCTCTCCAGCCAGCACTGGCTCTGCTCAGAAGCACAGAGATAGGACTGTCCCAGTGCCAGCATCAGGTAGGAGAGTGGAGTCTTTTTGGTTTGGCCGCAGAAGTCCTCACCAAGCATCCTGGTCCTCTCCAGGAGGTCTTAAGCAGTTTCTTCCTAGATCTGTTCCCAGTGAATGAAACTACTAGCCTGGGCTCAGGTCATTCACTCTCTTTGGCCCAGTATAAAAGGTAGTTTACCCAAGATGGCTTACCAAAGATGTTTTCTCCCTTAACAGCCTTAGTAAGTTCTTGGTAACACCTAAGAATCCCCTTTTCAGTAGCTAAAGAGGCTTGGGCTTGGGCCCCAGAGGAGGATGTTCAAACATCTGTTTCCCAAAGGGATGTATCTGAAGTTGCAAAAAACTGAAAGTCAGGTGGTGTTGAAAGTTCCCATAAATTTAGCTGAGACTTAATTTCATTTGTTCTTTCCACCAACCCAGAGGCCTGGAGGTGGTTGGCATGGTGAAGATGTAGTGATACTGGTTAGAATCCGGGAAAGCCCCTTCCGCCATGTGTGGACCCTGGGTCTTTTTGGGTTTTTGAGACAGGGTTTTTCTGTGTAGCCCTGGCTGTTCGGGAACTCACTCTGTAGACCAGACTGGCCTCAAACTTATGTAGATCTGCCTACCTCTGCCTCCCAAGTGCCCAGGAAGGGCACCAAACCCCAAAAAGCAGGCTGTTCCCACAGGCCCACTTTGCTGCACCTTGGCTTGATTTCTGGCCTCTAAGTCATTCGGGGTAAATGCCTGTGGAACATGCCACCGACCATGGTCTCTCCATATCATAGTGATCCCAGGAAGGCCTGCTCCTCCCCAGCTGACACAGCCTGCTCTGTGCTTTCAG
Seq C2 exon
AACCGAGTTTCCCCATTTAAGGACATGATTTTATGCTTCTCAGAAGAGGACTGGTCCCTTCTGGACCCGGCACAGACTGGTTTCTATGGAGAATTCATCATTGGGGAAGACTATGCAGTCTCTATGCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129:ENSRNOT00000058308:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]