MmuINT0180491 @ mm9
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98605396-98606698:-
Coord C1 exon
chrX:98606552-98606698
Coord A exon
chrX:98605500-98606551
Coord C2 exon
chrX:98605396-98605499
Length
1052 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTTTCTGCCCCTTCTATTAGATC
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATCTTGTGAGCAACCAGAGTGCAGAGGGACTTCTGGAAGACTGTGACCTGTTTGGGACAGCTCGGGATGATGTCCTGGCCATGGCTGTTAAGATGGCTAATGTCTTAGATGAGCCTGGGCAAGACTTGGAGGCTGATTTCCCCAAGA
Seq A exon
GTAAGTAGGATTTAAGGCAGGCCCACTGAGTATGGTTGCATTTGTGTCATTAGGGAAGGAGTGTTTCTTGTGACCTTGAGTATGACTTTAAACCATACTCATTAAGACAGGATGTTCTTCTTGTTTTGCTTACATTTTTTTTGAGGTAGAGTCTCATATAGCTCAGGCTATCCTCCAATTTACTCTGTAGCTGAGGATGACCTTGAATTTCTAATCCTCCTGCCTGGATTTTAGGTACTAACACTCCTGCTTTCTATGGTACTGGTGTTTGAACTCAGAGTTTCACATATACACTAAGCTACATCCCTTAGCCTTTGTTTTTTACTTTTAGGTGTGTGTGAAGGTGTGTGCATATGGGTATGTGTGGATGTTCATGTGTGTACTGGTCTATGTTGAGGCCAGAGGAAAAACTTGGGTGCCATTCTTCAAGCACTGTCCACCGCCTTCTTGACATGGGGTCTCCTTCACTGCCCTGGATCTTGCCAACTAGTCTAGACTGGCCAGTCAGCAAGCCTCAGGGCTCCACTTGTCCTTGTCTCTCCAGTGCTGGAGTTACAAGTTCATGTCACCATGCCTGTCTTCTCCTGTGTGCTAACTAGGGCATCAAACTCAGGTCCTCATGCTGGCGAGGCAAGCACTTTATCACCTGAGCCGTCTCCCTCGTCCCCATTGTCTGTCACCATTTTTATGTGTCCAGTTGAGTCATGTTACGTATTTTCATATTGCTTGGGTTTGTAGGAATCAAATAGGGCCCTATGTATGTTAGGCAAGCTCTACTACTGTGCTATCTCCCAGTCCTATTTTTTTGCTTTTTATTTTGAGAGAGGGTCTGAGTTGTCCAGGTTGGCTTTGAACTCATTCTGTGGCCCAGAAAGTCTTGTGTCTGGTGTGTCTCTATCTTTCATATCACTTTACCTGTTCCTGTCGAGTTCAATGAGACCAAGCAAGTGGTTCCTCTTGATTTGAATGACCCAGTAGCAAGGGTGGGATAGGAGGACTTCCAAGTTGAGACCCTAAAGAAGTTAATTTCTTCTTTCTGCCCCTTCTATTAG
Seq C2 exon
ATCCTTTGGACATTAACCCAAGTGTAGACTTCCTCTTTGATTGTGGCCTTGTAGGGCCTGAGGATGTATCTACTGAACAGGACCTTCCTAGAGCCATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-Zmym3:NM_001177985:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAGCAACCAGAGTGCAG
R:
TCCTCATGGCTCTAGGAAGGT
Band lengths:
246-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: