RnoINT0169142 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71304480-71305956:-
Coord C1 exon
chrX:71305810-71305956
Coord A exon
chrX:71304584-71305809
Coord C2 exon
chrX:71304480-71304583
Length
1226 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTTTCTGCCCCTTCTATTAGATC
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATCTTGTGAGCAACCAGAGTGCAGAGGGACTTCTGGAAGACTGTGACCTGTTTGGGACAGCCCGGGATGATGTCCTAGCCATGGCTGTTAAGATGGCTAATGTCTTAGATGAGCCTGGGCAAGACTTGGAAGCTGATTTTCCCAAGA
Seq A exon
GTAAGTAGGAGTTAAGGCATCCCCACAGACTATGGTAGCACTTGTGTTATTAGGAAAGGAGTGTTTCTTGTGACCCTGAGTATGACTCTAAACCTTACTCATTAAGACAGGTTGGTTTTGTTTAAAAATTTTTGAGGCAGAGTCTCATACAGCTCAGGCTATCCTCAAACTTACTCTGTAGCTGAGGATAACCCTGCTCCTGCCTCCTACTTTATATGGTACTGGAACCTAGGGCTTTATGTCTACTAAGCTACACCCTCTAGTCTTTGTATTTTATTTTCAGTTGTGTGTGAATGTGGGTGCAGATGGGTATGTGTGGATGTTCATGTGTATATACAGATCCATGTTGAGGCCAGAGGAAAACCTTGGGTGCCATTCTTCATGTACTGCCCACCCCTTTCTTTTTTTCTCTTTTTTTTTTAAAAAAGATTTATTTATTTTATATATGTGAGTACACTGTCGCTCTCTTCAGAAGAAGGCATTGGATCTGACTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCATCTCTCCAGCCCTGTCCACCCCTTTCTTGACACTCGGTCTCCTTCACTGCCCTGGAACTTGCCAATTAAGCTAGACTGGCTGATCAGCAAGCCCCAGGGGTCCTTGTTCTTGTCTGTCCAGTGCTGGAATTACAAGTGCATGCTACCATGCCTGACTTGTCCTGTGTGCTAGGGCATCAAACTCAGTTCTTCATGCTGGTGTGGCCAGCACTTTATTGACTGAGCCATCTCCCTTGTCCCCATCGTCTGTCACCATTTTTATGTATCCAGTTCAGTCATGTTAAATATATTCATATTGCTTGGGTTTGTAGGAATTAAAAGTAGGGTCCTGTGTATGTTAGGTAAGCTCTACTACTGCACTACATCCCAGTCTTATTTTTTGCTTTTTATTTTGAGAGATGGTCTGAGTTGTCCAGGTTGGCTTTGAACTCCTTCTGTGGCCTAGAAAGTCCTGTGCTACCGTCTGTAGCTTGTGTCTGGTGTCTCTGACTCCCTTTCCTACCCCTTTACTGGTTGCTGATGAGTTCAGTGAGGCCAAGCAAGTGATTCCTCTTGAGTTGAATGAGCAAGTAGTAAAGATGGGAAAAGAGGACTTCAGAGTTGAGACCTAAAGAAGTTAATTTCTTCTTTCTGCCCCTTCTATTAG
Seq C2 exon
ATCCTTTGGACATTAACCCAAGTGTAGACTTCCTCTTTGATTGTGGCCTTGTAGGGCCTGAGGATGTATCTACTGAACAGGACCTTCCTAGAGCCATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAGCAACCAGAGTGCAG
R:
TCCTCATGGCTCTAGGAAGGT
Band lengths:
246-1472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]