Special

GgaINT0075055 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr4:2295517-2296565:+
Coord C1 exon
chr4:2295517-2295663
Coord A exon
chr4:2295664-2296461
Coord C2 exon
chr4:2296462-2296565
Length
798 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
GTTCCTGTGTTTCCTTTCAGACC
3' ss Score
11.39
Exon sequences
Seq C1 exon
ACCTGGTGAGTAACCAGAGCGCAGAGGGTCTCCTGGAGGACTGTGATCTGTTTGGACCAGCGAGGGACGATGTGTTGGCTATGGCTGTCAAGATGGCAAACGTCCTCGATGAGCCAGGCCAGGACCTGGAGGCTGACTTCCCTAAGA
Seq A exon
GTAAGAGCTAGGTGAAGCAGGCACGTGGGGCTGCTCATGCTGCAGCAGGCTCCTCCTGCTGCCCTCAGCCCACCTTTGCCAGCAGCATTAAGACCTGTGTGAACTTACCTCCCCATGCACTCTGACTGACCCTGCTTGAGGCCAGGAGCTGAGGGTCTTGCAGATGACTGCTCACAGCAGGGGTGAGACCACCACTTTTGAACAAGTCTGTTTTTTAACTAACTGACCTCCCGAGGACATAGGTCTGCAGGAAAAGGAGAATGAGAAGCTGATTCTAACAGCACAAAGCATAGGGCAAAGGTAATGTGTGCTTACAGATAATGATTCCAGAGGATCCGGCGAAGCCCAAGAGAGGCCTGGCATTTTGGGAAATGGCAGAATTGCTGTGTGCCTCTGTCAGAGCTTAGAAGGTTGGGAAGAAGGGACAGACACACACAGCAGTGCTGAGGCAGTATAGCAGCAGCAGAGGACAGAGAATTGGGGTATTTGTGCCAGGCTGTCACCACTGCTGGCTTGGAATGAAGGGATGAGAGATGTTCCAGATGTTGCAGAACATTTTGGGTTCTGGTTAGTCTGAGAAATCGTGCAGCTCTGGCAGGTGATAGTGTTTCCTTTGTTGGGCTGTGGATAAATGTTTGTGCCAGGTAGAAGTGGAGGGTACGAGGTTTTGGGCTGCATGTTCTCTCTACAGCTGGCTGTAAGAACCAGAGCAGAATGGCAACTGGTCTTAGATGCCTGACTGTTATCTCTGTTGGTGAGGTGTCTGAGCTGATCTCCTGTTCCTGTGTTTCCTTTCAG
Seq C2 exon
ACCCTCTATACATCAACCCTAGTGTTGATTTCCTCTTTGACTGTGGGCTGGTGGGCCCAGAAGATGTGTCCACAGAGCAAGAGCTGCCTCGTGCTGTCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.060 A=NA C2=0.143
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTAACCAGAGCGCAGAG
R:
CTTTCGGACAGCACGAGGC
Band lengths:
246-1044
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]