GgaINT0075055 @ galGal4
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2286517-2287565:+
Coord C1 exon
chr4:2286517-2286663
Coord A exon
chr4:2286664-2287461
Coord C2 exon
chr4:2287462-2287565
Length
798 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
GTTCCTGTGTTTCCTTTCAGACC
3' ss Score
11.39
Exon sequences
Seq C1 exon
ACCTGGTGAGTAACCAGAGCGCAGAGGGTCTCCTGGAGGACTGTGATCTGTTTGGACCAGCGAGGGACGATGTGTTGGCTATGGCTGTCAAGATGGCAAACGTCCTCGATGAGCCAGGCCAGGACCTGGAGGCTGACTTCCCTAAGA
Seq A exon
GTAAGAGCTAGGTGAAGCAGGCACGTGGGGCTGCTCATGCTGCAGCAGGCTCCTCCTGCTGCCCTCAGCCCACCTTTGCCAGCAGCATTAAGACCTGTGTGAACTTACCTCCCCATGCACTCTGACTGACCCTGCTTGAGGCCAGGAGCTGAGGGTCTTGCAGATGACTGCTCACAGCAGGGGTGAGACCACCACTTTTGAACAAGTCTGTTTTTTAACTAACTGACCTCCCGAGGACATAGGTCTGCAGGAAAAGGAGAATGAGAAGCTGATTCTAACAGCACAAAGCATAGGGCAAAGGTAATGTGTGCTTACAGATAATGATTCCAGAGGATCCGGCGAAGCCCAAGAGAGGCCTGGCATTTTGGGAAATGGCAGAATTGCTGTGTGCCTCTGTCAGAGCTTAGAAGGTTGGGAAGAAGGGACAGACACACACAGCAGTGCTGAGGCAGTATAGCAGCAGCAGAGGACAGAGAATTGGGGTATTTGTGCCAGGCTGTCACCACTGCTGGCTTGGAATGAAGGGATGAGAGATGTTCCAGATGTTGCAGAACATTTTGGGTTCTGGTTAGTCTGAGAAATCGTGCAGCTCTGGCAGGTGATAGTGTTTCCTTTGTTGGGCTGTGGATAAATGTTTGTGCCAGGTAGAAGTGGAGGGTACGAGGTTTTGGGCTGCATGTTCTCTCTACAGCTGGCTGTAAGAACCAGAGCAGAATGGCAACTGGTCTTAGATGCCTGACTGTTATCTCTGTTGGTGAGGTGTCTGAGCTGATCTCCTGTTCCTGTGTTTCCTTTCAG
Seq C2 exon
ACCCTCTATACATCAACCCTAGTGTTGATTTCCTCTTTGACTGTGGGCTGGTGGGCCCAGAAGATGTGTCCACAGAGCAAGAGCTGCCTCGTGCTGTCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTAACCAGAGCGCAGAG
R:
CTTTCGGACAGCACGAGGC
Band lengths:
246-1044
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]