MmuINT0180543 @ mm9
Intron Retention
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:57409425-57415647:-
Coord C1 exon
chr14:57415441-57415647
Coord A exon
chr14:57413338-57415440
Coord C2 exon
chr14:57409425-57413337
Length
2103 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TATAATGTATTTCCTTACAGATA
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTTCGCCATGAAATCAGTGTTAACAGTATAACACATAAGCTGTGCAGTAATAATTGCTTTAATGAATACAGATTGACGAATGGTCTAATAATGAACTGCTGTGAACAGTGTAGCAAGTATATGCCCAAGAGTACTGGGCACAGCATTCTGATAACAGGTCAGCAAAAGAGATTCTGCTGCCAGAATTGTGCTGACGAATATAAAGAG
Seq A exon
GTAATTCTTTGTCTTGCTTTGTAATGTATTTTATGTAATGGGTGTTTTACCTGCGTGTTTGTCTGTGCACTACATGCATCCTTAATGCTCTCAGAGTCCACAAAAGGATGTTGGATCCCTTGGAACTGTAGTTATAGACAGATGTGAGCCAGCATGTAAGTACCTAGCGATCAAGCCCAGATCCTCTGGAAGAACAGCCAGTCTCTCAGCACTCTTAACTGCTGACGTAATTTCTCCAGCCTCTAATTCTGCCTCTGTCTGTCTATCTAAAATCTCTATCCCTGTCTCTCTCTGTTTCTTTCTTTGTGTGTCTGTGTGAGTGCAATTGGTTGTGTGTGAGGGTTGGAGCACAACCTGAGATGGCTGTGCTTGCCTACTACCTTGTTTGAGACAAGATCCCTGGATGCACCGAGCTACCTGATCTTCCAGCTCCTGGTGATTCTCTTGTGTGGCTGTTCCTCATCGTGTTGCAGGAGCACTCAGATTTAGATGGATGCCACTGTACCAGGCTTTCACATTTTGATACCAGGGATGATGGTGTATGCCTTTAATCCTGGCACGAGGGTGGTCAAAGCAGGTAAATCTCTGTGAGATCAAGGCTACCTGATTCTACCTAGAAACTTAGATCAGCCAAGGCTGCAAAGCAAGACCTGTGTCATACAGATCTGACTAAATATCAATTTTTTCTTTAGCAATCTCACACATAAATATAATGCATATGTATAATATATTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTCCTGAGACGGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCGGTCATATATTTTCTTTTTATTATGCTCATTCCTTGCCCTTATTTCTACTTTGTCAACTTTCCTCACCCCTCCATATCCCTTCTCTATGTTCATGTTTGTTTTATTACTTACTTGTCTGTTGTTGTGATAAAATATTATGACTAAGGCAATTTATAGAAGAAAGGGTTTATTTGGGGTTCCCTATTCCAGAGTGTGAGGTGGAAGCAGCTGTAGCAGTAGGCAAGGAAATGGTAGGAATATTGAAACCTCAAAGCCTTTTTGGAGATCTCATTCAAACTGCCACACTGTCTTTTGTTTTGTAATGAACTGAGTTTAACTAGGGCTGCCTTTGTAACCATGTGTTTGGCCTAGGACACCTAATGTCATTCTAAAACTAAACATGCTCAAGAGTGCATGCATTCATATACTTATGTGCACATGTGCATGTCCCATACATAAACACATATGTAAAAATAATAGCCAGGTGTGGTGGTGCAAGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGTCTGGTCTACAGAGAGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGGGGGTTGGGGTGTGTGTGTGTGGGGGTGTAAATAGCTGGGCATGGCAGTGTCCAGAGGCAAGCAGATCAGGCCAGCCTGATCTTACATAGTGGGATTCAGGACTGTCGGGAGTACATAGTGACACCCTGCCTTGAAAAAAGTTTTTGTTTTTATTTGTTTTAGAAACTAGGCTTTTACTAAAAGTTTCCATGACTATCTTGGAACTCACAGCTAGTCTGGAACTCACATCTGCCTGCCTCTGCCTCCCAAGAACTAGGATTAAAGATGTGTGCTACACCTCTCTGCTTTGGAGACATTTTCTTCACTGAGATTCCTTCTTCTTAGATAACTTCAGCTTGTGTTAAACTGACATGAGTCAACATGTTACAGTCCCACCAAGCCCTTAGTGATGTTCTAATTTTGCCTGAGTCACATCATGTTTTCATTTGTCACTGTCTCTCAGTTGTAGCCATCCTGATTAGGAGTGCTTCACTGCATGTGTATACGTACACCAAGTGCATGCCGTGGGATGCTTTATGTCTTTGCTGGCTAATAGCGAACCGTTGCCTGCTCTTATGTCTTTATTTCAACTTTTAAAATGCCAATGAATTATAATGTATTTCCTTACAG
Seq C2 exon
ATAATGGAAGCAAAATCAAAACTACTGCTTTTACAAAATAGAAAAAGGAATGCTATCAGAGAAGAAAATGAAAAACGATTACGTGAATCATCAGGTACACTTTCAGGAAACACAGGAGACATACCCGAAAAAAAGGAAAAGTCTTCAGAGATAATAAAAGTCGCAGCAGACTGTAGCCTAGATACATCATCAGAGGAACAAAATGTGAATTTACCTTGTTCTGTGGCAGTAATATCTGATACATTTAAAGAGCAACTAGGAGACAAAAATTCAGAGGAATTGGATATGTCCATTTTACCTTCTTTGGATCCAGGTTCATGGCCCCGAATTTTGAATATGAAACAACGTGAATTTCTTGTCAAAAACAATCCACCTCAAATAAGAAATTTTAATTTTCCAAAAGATAGTGCAGGCAAGAAGTTTTCAGAAACGTATTATACCCGAATTCTTCCAAATGGTGAAAAGGGCACCAGACCCTGGCTGCTCTACTCAGCCTCGAAAGACTCTGTGTTTTGCCTGTATTGCAGACTCTTTGGGGAAGGAAAAAACCAACTGAGAAATGAGAATGGGTGCAAAGATTGGCATCATTTGTCACATCTTCTTAGTAAACATGACGAAAGTGAAATGCACATCAACAATAGTGTTAAGTATTCAAAATTAAAGTCTGACTTGGAAAATAAAACCAATGAAGCTACAGAAGGTGGGGAAGATTGTGTGCAGCTACTGTACACATAATGTCCTGTCTGCTCTACTTATGGCAGTGTCTGCAGTACCCAGACATACACTGTGTAAGAGGACCTTACAGGAGCTCATTAGCAATATGTCTAACAGCAAACAAATAGTAAAAAATGCTCCTGTTCTAAACCTAAAAGCAATTTTCGAGAGTGTAGTCATTCTTGCAGACTTTAGCAAAGGCAGTTTGAGCTTTGTCACTGTTAGGGTTTCCACCTTGTAAAATGTTGTTGGAGAACTTGCACTTAATGGCCTAAGAGCAAGAGGTGGCAAGATGCATATGTAACAAGCTAAAGAAAATGCATTCAGGCCACATGGTGGCGGTGTGCACCTTTAATCTCAGCACTCAGACACAGAGAGTTGGATATCTGTGAGCTCTAGGCCAGCCTGGTCTGCAGAGCAAGTTCCAGGAGAGCCAAGGTATACACAAACCCTGTCTTGAAAAACCAAAAAGAAGGAAAAAAAGAAGAAAGTGCATTCAAACAGCTTAAGAAGCAACAGCTGTTTGTTATTAAACCAAATTGAGTTTTATTTCTTTAAAACATTTTTTGTGCAAAACAGTTATTTGTTGTGGTAAATAGAAGTAATTTGTGTTTTATTGATTTTATATTTCTGTTTCCAACTTAATGTGTAAATGTTTTAGTTTTGTTATGAGAATTATAAAGAATATATAGTTATTAGTATAAATATAAGAATTAAAATGTGGTATGTATATGTGTGTATACATATATATATGTATGTATATATAGTTAACTTTTCAGTGTTGTTAATTTTTCTTGTGAAAGTATACTCTATGTGTGAAATTTGAGAAAGTATGAATCTAAAAAAAAATTTCTTCAGACTTGATTTATTTTTGTTTTCTTGTGTAAAAGCCCTTACTTATATGAAACTGAGAATGATGGCACTCAGGAGGCAGGGGCAGGTGGATCTCTGAATTCAAAGCCAGCCTGGTGTGCAGAGCAAGTTTCAGGACAACTGGGGCTACATATCTCAAAAAACAAAGAAAAAACTTGTGGTAGCTACAACTGGAGCTTGGGTCTTCTGGATGAAGATTCTCTTGTGGGTTTTCACAAGTTTGTCACTGAATTCCTGAAAAGGAGACTTAGTGATGACAGTCTCTTTCCAGAGGCTAGGGGCCAAGTAGCTGTAGGTGTTAGGGTGGCCTCAACACAATTGCCAAGGGTGGCAGGGCAACCCCTGACTGATGGTAACAGTAATCAGTACTGGCTGGCCACCAGCAATAGCTTCTTGGGCACAGGAGCAGGCACAATACAAGTGTCCGTGGAGACAGGGAAGAGATGTACCAACACAGAGGCACAGTCACCTGTTACCTTGCATAGAACTGTGGCGCTTGTCAGTCTTGTTTCTCCAGTAGCCTCTCCACACTGGGAGAGTGGAAAGCTTGGCCGAGATGATGGTGGCCTTTTGGATGGCAGTGGCTACCTCCTTAGAGCACCTAACACCAAGACCAATGTGACCATTGTAGTCCCCAAAAGCCTTTACCTGGACCGATGCTCAGCCCTCGTCTGCTCTCTGCACTGGCATGGTCTTTAGAGCCTCATCCTTAAGTAAAAAGTCAACTTCAGACTTCCTAATGGGCAGGGAGAACAAACAGGCAGGTCTCTTCCAGGGACTTGGTCTTCATGTCCTTGACCAGGTAGTCCAGCTTGTTCCTGTCCTACCTCTAAGAGCACCACGGCCATGACCACTACTACAGCTCCCTGGGCCTCCAAGCACTCGAGCTATACCAGCTTCATTGGTCATTTGACGTTTTCCTAAAGAAGAAGCAAATTTTCTGATGGCCATCTATGGTCCTGATCATGCATTTGATAGTTTTTTGGGTTTGTTTGTTTGTTTGTTTTTGTTTCTGATTTCTGATGTTAATTTTATCATCTGTTAAATTCTTAGGGATACGTGAGCTTTGTTTTCCTCTTTAGGGCTTTTCTTGCAAAACAGTGTCATTAACAATGGCCTAAGAAGATGCTTCCTTCTGCATGGAGAACAATTGAGGCTCAGTCATGTTGCTCTGTGACAGTATTTTCTAAAATACCCACTAAAACCATTGTAGGTAAATTATACCTTTCCAGGCAGAGGATGTAGTTTGGTTAGTAGAATGCTTGCCTAGCACACAATAAACTGGGTTTGATCTGCATTGGCCATGTGGCAGCAGGCCTATCACCATAGCACTCTAGTGGTAGACACAAACAGCAAGTGTGAAGCCACCCTTGGGTTTATGAATCCCTGTCTCCAAAAGAAAGTTGCTTTTAATCATTTGGGCTTGGATCTAAGTGAGTCATGGTGGCTGTCAACTGTAATCTCAGCACTAGGGAAGGTAACGAGGTGGGGGATGGGGGCGGGGAGGATTGTTCATAATTCACGGCTAAGCCTGGGATACATAATGAGTTCTAGGCCAGCCTGAGCTATAATGTGCTATTCTCATAAAGAGAGAAACTGGCTGATTTTAATGTAAATACAGCTTTGTGATGGCTTCAAAATATCACTACACTCAGAGGTCTACAAGGCTACTTTAGAAAATATAACACTTTAAAGTTTTATGTGTAGGAGTGTTTTGCCTGTATGTATGTTAAATGTACCATGTGTGTACCTGGTGCCTGCAGAGGCTAGAAGAGGGAGGTACACCTGGAACTGAAGTTATAGATGTTTGTTAGCTACTGTTTGAGTGCTAGGAACCAAGCCCAGATTCTAAGGGTCTTAAAGGTTCTCCTTGCTGTCTTGATTTGGTGGTGTGCTGAGAACATCGGTGTGGAAATAGCATCATTCTGCTGTTGGAGTGATCCTCTCCACTATCCACATACTTATTGTTGAAATTCTTCTCAGGACAGGGTTGCTCTGTGACTTGAATACAAAAGTATATAGCTTGCCGGGCCTTGTGGCGCACGCCTTTAATCCCAGCACTCAAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGCCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAGAAAAAGTATATAGCTTGATATACTCGGTTTCTGACTGGCATTCAGACAAAGGTGGTAGAAAATCTGATCCAATTGTGGTGTTCTGTCTCCTGGGAATCAGTATTGTGTATACCACTTTCAACTGGAAATAAAAATTGGGTCCAAGTCCTTTTATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123-Zmym5:NM_144842:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.168
Domain overlap (PFAM):
C1:
PF032929=Pox_P4B=PD(46.2=79.7),PF064679=zf-FCS=PD(55.0=31.9),PF064679=zf-FCS=WD(100=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: