BtaINT0164800 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36515593-36520152:+
Coord C1 exon
chr12:36515593-36515805
Coord A exon
chr12:36515806-36518745
Coord C2 exon
chr12:36518746-36520152
Length
2940 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TATAATCTATTTTTCCTCAGATG
3' ss Score
9.87
Exon sequences
Seq C1 exon
ATTCGGCATGAAGTCAGCGTTAACAACGTGACACACAAGCTATGCAGTAACCAGTGCTTTAATAAGTACAGGCTGGCCAATGGTCTAGTGATGAATTGCTGTGAGCAGTGTGGCGAGTACCTGCCCGGCAAAGGAGCTGGGAACAATGTCCTGGTCATTGAAGGTCAGCAGATGCGATTTTGCTGCCAAAGTTGTGTTAACGAGTATAAACAG
Seq A exon
GTAATTCTCTTTTAATGAGTTTTAAATGATCAAGCTTGCAGTAACCGTCCTGATAGCTTTCATTAAGCAGATTTTTCTTAGAATCTCATTTAGTTCTTTTGTCAGTCTTTCATTGAATATTACTCTCAAATGAGTATTGAAATTGATTGATCTAAGCTTGCTTGCTTTAAGACTTGACATTTTGCAGACATTACAAGAAGTAATTTTCTCCTGTACCGTTTTGCGTCCCCACTAGTTCCAATTACTCCGTAGTCTCAACAATATTTGGTGTTGTCTGTTTTGATTTAATCTATTCTAGTGAATATGAAATGATTATCTCATTGTGGTTTTAATTTCCTGATGACTGCTATTCCTTTTTTTATCACGTGTATATCTTTTGTAAAGTATCCAAGTCTTAGCTCACTTTTTTTTTTTAGTTCACTTTTTTTATTGGGTTGTCTTTTCTGTTATTGAGTGATAGGAATTCTTTATATATTCAAGATACATTTCTTTTGTAAAATGTATTTGGAAGATTTTTCTATTGGACAGTGTTTTTGTCTTTTCTCAGTGTTTTTGAAAAGCCCAAGTTTTACATTTTGGTAAAGTCCAATTTACTGTTTGCTTTTCTGATTAATACTTTTTGTCTCTTGTTTAGGGTGTCTTTGCCTACCAAGGTTATGAAGATATTTACCTATCTTGTCTTCTTTTTAGGTTTAAATTTTATATCTGTGATCCATCTCAAGTTAATTTTGTGTGGGAGGGCTTTCCTACTGATCCTGTGGTTAAGATTCTGCCTTCCAATGCAGGGAACACAGGTTCAATCCCTGGACAGGGAATTAGATCCCGCATGCTGCAGCTAAGAGCTTGGCATCAGTGAGTGGGAGCTAAAGATGCAGACAGACCTGCAATGGGCCAGACAGGCCTTCACAGCAAAGAATGACCTGGCCAATATATCATTGGTGCCAAAGTTGAAAAAGGATGAGAAGGCAGCTGGAGGGTGACTGTGTGTGGTAAGCACAGTGGCAGAGAGAACTAAACTTGCACCCTCCTCATTGAGAAGTCGATAGCAATGCCTAAAAGTGGGAGGAAAAATCAGTAAATAGTGATACAAACATGTTGTTGTGATACTTGGAAATAAATATGGAAAGAATCATCTAAAAATGTTCAAAGTACTTCTGGGAAAAGGGATGTTTTAATTAATAGAATTATTTCTTTTAATTAGATGTAACTGGTTGATTCTCTTTACTAAATGTTTATTAACTTTCAATTAAATAAAACCTTCGAAATAGTATTAAAGATACTGAAGTTCAGACAGGGTCTTCCCCAGAGTCACACAGCTAGGTTCTACCTCATGTATAATACCTTAGGTAATGTGAAGAACTAAGATCCTGCAAGAAAATATGTATATGTATATGCTGTGTTCGCTCTGATGCCAACATTTAATTATATGTAAGCCTTGAGTTTCCTGATGATCTACACTGAATTCAATTTAATGATCCCCAGGAAGATGAGTCTTAGATGTGGGGGAAATTGTGACAACTTGACTACCTATTCATTACCAAGACACTCAAGAAGGAAAGAAAGAAGACCAAGGCTTGAGTTTGGTTGTTTAAAAAAATAACATTAGCAATAGTCCTTGGCATTCTGTCTCTTCTTAAATATGCTCTTTTGGTATCGTCTTACCAGTCCCATAGTTTCAGCTAACATGTATTTTGATGACTTCCAGAATATATCTGGAATATATATTTATTCAGGTTCACACCAGTGTGTCTGTCTAATTTCCATTTGAATGTTCCACAAATATTTGGAACTCTGTCCACAACTGACACGCCAAGCCTACTTTCCTTCTTTGTTTCCCAAATCAGTAAATAACCCCCCATCCAGTCAGGTGTCCAAGCAGAAACTTTGGGTTATTCCTTACTCTTCTGTCTTAGCCCCCAGTGCCACTCATTTCCCAACTAACCTGGATTCTACTTCCTAACCCACTCCTGGCTCTGCCCTGTGCCCACTACCATAGTCCTAGACCTGACCGCCGTCCCTTCTTGCCAGAATTGGCCCCACAGCCTCCTGGCCGTCTCTGTTTCCTGGTTTCCCTGAGCACTGGAGACCAGGGTGCAGTCAGGGTGGTCTTCCAGGGCACACGCCACATCATGTCACTCCTGCTCTGCCTCGGTGCTGCTTCTGCATGCAGGACTGCCTCAGAGCAGAGCAGTGCTCTTGGTTCCTGAGCTCCATTGTTTACCGTGGTCAGGTTGTACCCTGTACTAAAATACTAGAGCTAGCAGATGCCCTTCACAGTGCATACATTTCTTTTTTTGACTCGTGTGTGTGTGTGTACATTTTTGACCCCAGAATAGCTAATTTTAATTTTTATTAGATGAAATCATATACTATATGGTACCTTGTGACTGAATTTCACATATACTGTTTTCAAGGTTCATCCAAGTTGTAGCATGTATCTTTACCACACTTAATTTTATTGCCAAATAATATTTCATTGTATGGATAATACGACACTGTTATTTCTATTTTCTTGGCTCTTGTGAATAATGCTGCTGTGATCATTTTGTACAAGTCTTAATGTATTTTCATTTTTGAATTGCCACTCTTCAAAAGTGGCATAGGGTCACTATGGTGACCATATGTGTCAGCATAGGATGACATAGGGTGTCTTACAGAGTGACTGTTAATTTTGAGGAATTGCATTATTTTCCATTTTACATTGCCATCAGTGCCTTAGGAAGGTTCCAGTTTTTCTACATCTCTGCTAACACTTGTTATTATCACTCCTTTTATTGTAGGCATCCTGGTGGGTATGAGGTGATTTGTAATGGTATTGAATTGTATTTCTTTGATGATTAATGATAAGCATCTTTTTCATATGCTTACTGGGCATTTGTATATACATTAACTTTTTTCAGTGTTAATAATGTAAGAAAATTATAATCTATTTTTCCTCAG
Seq C2 exon
ATGATAGAAACAAACTTAAAAAAAATACTAGCATCAGAAAACAGAAAAAGGAATGCTGTTGGAGAAGAAAATGAAAGAGAATTATATGGATCATTGAACATACTTCCAGAAAAAACAGAAGAAATACCAGAAAAAAAGGAAAAGACTTCAGAATTACAGGTTTCAGCAGAATGTAGCCTAGACGCATCAGTGGTCCAACAGAATGTGAATTTACCTCCTTCCGTGTCAGACATAGCTGATAAACTTCAAGAGCAACTGGGAGAGAAACCATCAGAAGACTCCATTATTCCAGCTGTGCTTTCTGCAGATCCAGGTACATGGCCCCGAATTTTGAGTATTAAACAGAGGGACACTCTAGTTGAAAATGATCCACCTCAAGTAAGAAATTTTAACTTCCCAAAAGACAGTACAGGGAGGAAGTTTTCAGAAACTTACTATACAAGAATTCTTGCAAATGGTGAGAAAACCACTAGATCCTGGTTACTTTATTCGACTTCGAAAGATTCTGTGTTTTGTCTGTACTGCAAACTCTTTGGGGAGGGAAAAAATCAACTGAAGAATGAGAATGGGTGCAGAGATTGGCAGCATTTATCACATATTCTTAGCAAACACGAGGAGAGTGAAATGCACATCAACAATAGCGTTAAATATTCAAAATTAAAATCTGATTTGAAAACAAGTAAAATTGTTGAAGCTTCAGAACACAGATTACAGGAGAGAGAGGGGAAGGATGGTGTGAAGCTGTTGTACACCTTAGACCTGATCTGACATGACATGAAGAGGTTGAATACTTATTCAGAGTTGTACCCTGATAGTTGGTGCTTTGTGCTGAGGTTCCCAGATAGTGCTTCCTCCGCTCATTAGTAATTATAGCAAGTTACCTCGTAAAGATGGTTTCTGCTCCAGGTTCTCATGATTAATGCCCATTCCAGTGAAGGCAGTTGTTGATCTTTTCAGTCTTTCAATTCACATCTTTTAAAATGGGCATTTCAGGACTGACTTTTGACTGGTGTGATTAATATTTTGTTCTGATTATCTTGAAAGAGGGAGAAAAAGCCTTGAATTTATCAATACCAGTTGAACAAGATACATATGTGAACAAGTATTGTTATTTAGAAATAGAATGGGATCTGAAACTGCAGCTTTTTGCTAGTAAACCAAATACTTATGGTTTATTTCATTTGGGCAAAATGTTATTATTTGAACAAAGCAGCATCATTTGTTATGTTAAATGAATTAAGGTGGTTAATTTGTTTTTTGGTTTTGTTTTAATTTATAAATGTTTTAGCTTTTATTGTCATGTGAAAACTATAAGCATAAAGAATATACCTATTTTTATGTTGGTACAAATATAAAATATATTGTTGGTATAAATATTAAAATAAAAATATATTAAGTTAATCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167:ENSBTAT00000009433:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development