MmuINT1035876 @ mm10
Intron Retention
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:56792929-56796810:-
Coord C1 exon
chr14:56796604-56796810
Coord A exon
chr14:56794501-56796603
Coord C2 exon
chr14:56792929-56794500
Length
2103 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TATAATGTATTTCCTTACAGATA
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTTCGCCATGAAATCAGTGTTAACAGTATAACACATAAGCTGTGCAGTAATAATTGCTTTAATGAATACAGATTGACGAATGGTCTAATAATGAACTGCTGTGAACAGTGTAGCAAGTATATGCCCAAGAGTACTGGGCACAGCATTCTGATAACAGGTCAGCAAAAGAGATTCTGCTGCCAGAATTGTGCTGACGAATATAAAGAG
Seq A exon
GTAATTCTTTGTCTTGCTTTGTAATGTATTTTATGTAATGGGTGTTTTACCTGCGTGTTTGTCTGTGCACTACATGCATCCTTAATGCTCTCAGAGTCCACAAAAGGATGTTGGATCCCTTGGAACTGTAGTTATAGACAGATGTGAGCCAGCATGTAAGTACCTAGCGATCAAGCCCAGATCCTCTGGAAGAACAGCCAGTCTCTCAGCACTCTTAACTGCTGACGTAATTTCTCCAGCCTCTAATTCTGCCTCTGTCTGTCTATCTAAAATCTCTATCCCTGTCTCTCTCTGTTTCTTTCTTTGTGTGTCTGTGTGAGTGCAATTGGTTGTGTGTGAGGGTTGGAGCACAACCTGAGATGGCTGTGCTTGCCTACTACCTTGTTTGAGACAAGATCCCTGGATGCACCGAGCTACCTGATCTTCCAGCTCCTGGTGATTCTCTTGTGTGGCTGTTCCTCATCGTGTTGCAGGAGCACTCAGATTTAGATGGATGCCACTGTACCAGGCTTTCACATTTTGATACCAGGGATGATGGTGTATGCCTTTAATCCTGGCACGAGGGTGGTCAAAGCAGGTAAATCTCTGTGAGATCAAGGCTACCTGATTCTACCTAGAAACTTAGATCAGCCAAGGCTGCAAAGCAAGACCTGTGTCATACAGATCTGACTAAATATCAATTTTTTCTTTAGCAATCTCACACATAAATATAATGCATATGTATAATATATTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTCCTGAGACGGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCGGTCATATATTTTCTTTTTATTATGCTCATTCCTTGCCCTTATTTCTACTTTGTCAACTTTCCTCACCCCTCCATATCCCTTCTCTATGTTCATGTTTGTTTTATTACTTACTTGTCTGTTGTTGTGATAAAATATTATGACTAAGGCAATTTATAGAAGAAAGGGTTTATTTGGGGTTCCCTATTCCAGAGTGTGAGGTGGAAGCAGCTGTAGCAGTAGGCAAGGAAATGGTAGGAATATTGAAACCTCAAAGCCTTTTTGGAGATCTCATTCAAACTGCCACACTGTCTTTTGTTTTGTAATGAACTGAGTTTAACTAGGGCTGCCTTTGTAACCATGTGTTTGGCCTAGGACACCTAATGTCATTCTAAAACTAAACATGCTCAAGAGTGCATGCATTCATATACTTATGTGCACATGTGCATGTCCCATACATAAACACATATGTAAAAATAATAGCCAGGTGTGGTGGTGCAAGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGTCTGGTCTACAGAGAGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGGGGGTTGGGGTGTGTGTGTGTGGGGGTGTAAATAGCTGGGCATGGCAGTGTCCAGAGGCAAGCAGATCAGGCCAGCCTGATCTTACATAGTGGGATTCAGGACTGTCGGGAGTACATAGTGACACCCTGCCTTGAAAAAAGTTTTTGTTTTTATTTGTTTTAGAAACTAGGCTTTTACTAAAAGTTTCCATGACTATCTTGGAACTCACAGCTAGTCTGGAACTCACATCTGCCTGCCTCTGCCTCCCAAGAACTAGGATTAAAGATGTGTGCTACACCTCTCTGCTTTGGAGACATTTTCTTCACTGAGATTCCTTCTTCTTAGATAACTTCAGCTTGTGTTAAACTGACATGAGTCAACATGTTACAGTCCCACCAAGCCCTTAGTGATGTTCTAATTTTGCCTGAGTCACATCATGTTTTCATTTGTCACTGTCTCTCAGTTGTAGCCATCCTGATTAGGAGTGCTTCACTGCATGTGTATACGTACACCAAGTGCATGCCGTGGGATGCTTTATGTCTTTGCTGGCTAATAGCGAACCGTTGCCTGCTCTTATGTCTTTATTTCAACTTTTAAAATGCCAATGAATTATAATGTATTTCCTTACAG
Seq C2 exon
ATAATGGAAGCAAAATCAAAACTACTGCTTTTACAAAATAGAAAAAGGAATGCTATCAGAGAAGAAAATGAAAAACGATTACGTGAATCATCAGGTACACTTTCAGGAAACACAGGAGACATACCCGAAAAAAAGGAAAAGTCTTCAGAGATAATAAAAGTCGCAGCAGACTGTAGCCTAGATACATCATCAGAGGAACAAAATGTGAATTTACCTTGTTCTGTGGCAGTAATATCTGATACATTTAAAGAGCAACTAGGAGACAAAAATTCAGAGGAATTGGATATGTCCATTTTACCTTCTTTGGATCCAGGTTCATGGCCCCGAATTTTGAATATGAAACAACGTGAATTTCTTGTCAAAAACAATCCACCTCAAATAAGAAATTTTAATTTTCCAAAAGATAGTGCAGGCAAGAAGTTTTCAGAAACGTATTATACCCGAATTCTTCCAAATGGTGAAAAGGGCACCAGACCCTGGCTGCTCTACTCAGCCTCGAAAGACTCTGTGTTTTGCCTGTATTGCAGACTCTTTGGGGAAGGAAAAAACCAACTGAGAAATGAGAATGGGTGCAAAGATTGGCATCATTTGTCACATCTTCTTAGTAAACATGACGAAAGTGAAATGCACATCAACAATAGTGTTAAGTATTCAAAATTAAAGTCTGACTTGGAAAATAAAACCAATGAAGCTACAGAAGGTGGGGAAGATTGTGTGCAGCTACTGTACACATAATGTCCTGTCTGCTCTACTTATGGCAGTGTCTGCAGTACCCAGACATACACTGTGTAAGAGGACCTTACAGGAGCTCATTAGCAATATGTCTAACAGCAAACAAATAGTAAAAAATGCTCCTGTTCTAAACCTAAAAGCAATTTTCGAGAGTGTAGTCATTCTTGCAGACTTTAGCAAAGGCAGTTTGAGCTTTGTCACTGTTAGGGTTTCCACCTTGTAAAATGTTGTTGGAGAACTTGCACTTAATGGCCTAAGAGCAAGAGGTGGCAAGATGCATATGTAACAAGCTAAAGAAAATGCATTCAGGCCACATGGTGGCGGTGTGCACCTTTAATCTCAGCACTCAGACACAGAGAGTTGGATATCTGTGAGCTCTAGGCCAGCCTGGTCTGCAGAGCAAGTTCCAGGAGAGCCAAGGTATACACAAACCCTGTCTTGAAAAACCAAAAAGAAGGAAAAAAAGAAGAAAGTGCATTCAAACAGCTTAAGAAGCAACAGCTGTTTGTTATTAAACCAAATTGAGTTTTATTTCTTTAAAACATTTTTTGTGCAAAACAGTTATTTGTTGTGGTAAATAGAAGTAATTTGTGTTTTATTGATTTTATATTTCTGTTTCCAACTTAATGTGTAAATGTTTTAGTTTTGTTATGAGAATTATAAAGAATATATAGTTATTAGTATAAATATAAGAATTAAAATGTGGTATGTATATGTGTGTATACATATATATATGTATGTATATATAGTTAACTTTTCAGTGTTGTTAATTTTTCTTGTGAAAGTATACTCTATGTGTGAAATTTGAGAAAGTATGAATCTAAAAAAAAATTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123:ENSMUST00000173954:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.168
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.9),PF064679=zf-FCS=WD(100=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types