RnoINT0169189 @ rn6
Intron Retention
Gene
ENSRNOG00000029220 | Zmym5
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37042396-37047468:-
Coord C1 exon
chr15:37047262-37047468
Coord A exon
chr15:37043131-37047261
Coord C2 exon
chr15:37042396-37043130
Length
4131 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TATCATCTATTTCCTTACAGATA
3' ss Score
11.32
Exon sequences
Seq C1 exon
GTTCGCCATGAAATCAGTGTTAACAGTATAACACATAAACTGTGTAGTAACAGTTGCTTTAATGAATACAGATTGACCAATGGTCTCATAATGAACTGCTGTGAACAATGTAGCAAATATATGCCCAAGAGTACTGGACACAGCATTCTGATTACAGGACAGCAAAAGAGATTCTGCTGCCTGAGTTGTGCTGACGAATATAAAGAG
Seq A exon
GTAATTCTTTGTTTTGTTTTGTAATGTGTATATTTTACATACATGGGTGTTTTACCTGCATGTTTGTCTGTGCACTACATGCATCCTTAATGCCCTCAGAGGCCAGAAAAGGATGTTGGATCCCTTGGAACTATAGTTAACAGACAGATGAGCCACCATGTAAGTATCTAGCAATCAAGCCCAGATCTACTGTGCGTGTGCGGTTGCATAATTGCTTGTGTGTTGGGAGGGTTAGAGCACAACCTGAGAGGTCTTTCCTTGCCTTCTACCTTGTTTGAGACAAGATCCCTGGAATAGACCAGGCTACCTCACCTTCAAGCTTCTGATGATTCTCTTGTGTGGCTGTTTCCCATTGTGGTGTAGGAGCACTCAGATTTAAATGTATACCACCACACTGGGCTTTTACATTTTTTTTTTCCTTTTTTTCGGAGCTGGGGACCAAACCCAGGACCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAACTAAATCCCCAACCCCGGACTTTTACATTTTGATACCAGGGATGATGGCGTATACCTTTGATCCTGACACTAGGGAGGCCAAAGCTACCTGATTCTACCTAGAAAGTGAGATCAGCCAAGGCTGCAAAGCAAGACCTCGTGTCACAGAGAGCTGACTAAATATTATCAATTTTTTCTTTAGCAATTTCACACATAAATATATTGCACATGTGTAATATATTTTGTTTTCATTACGCTCATTCCTTGCCCTTATTTCCACCTTGTCAACTTCTGCCCCTCCGAAGCCCTTTCCTATGTTCATGTTTGTTGTATTACTTACTTTTCTGTTGTTGTAGTAAAATACTATGGCTAAGGCAATTCATAGAAGAAAGGGTTTATTTGGGGTTCACTATTGAAGAGGGTGGGGTGGAGGCAGCTTTAGCAGTAGGCAAGGAAATGATAGGAGTATCTAAACCTCAAAGCTTTTTTGGAGATCTCATTCCAACTACCACAATGTCTTTTGTTTGTTTTGTAATTAACAGTTTAAGTAGGGCTGCCCTAGGATACCTAATGCTGCTGTTCTATGACTGAACATGCTCAGGAGTGCATGCATCCATATACTTAGTGCACACGTGCATGTGCCATAAACACATATGTAAAAATAATAATAAGCCTTGCACATTGAGTATAAATTAAAGAAAAAAAGATGGGGAAATATGTGTAATCAAAATAGGGCTCAACTGTATTTGTAGATCTTGACTTGTTTCAAAGTGGTCAACAGGACTGGAGAGATGGCTCAGTGGTTAAGAGTTCTTGCTGTTTTTCCAGAGGACTCAAGTTTAATTCCCTGCCACCACATCAGGTACATTTGGCTTCTACTGGCGCGTGCGCGTGCACATACACACGCACGCACGCACACACAAAATAACTAAAAGTTCAAAATTTTCCTTGGTTAGGGAACACAAATTTGAAGCTTGCCTGGGCTACATGAAAGTCCGTTTTATAAAAATAACAATAACAAAAAAAACCCTGGCTTTTGAAAAATCTTTTAAAAAGTATTGTATACTGAATTAAAATACTATGCTGGCATGTCCAGTGCAGGGAAGAAGAGTCAGAGTTTCGAGGCCAGTCTGGCATGTAGGGAGGTCCTGTTTAAAAACAAAGTAAGGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTAAACTGGAAGCTAAACATACAATTTTTAAAAAAGTCTTAAAAAAGCCAAGAAACAAAATTAAGTAAACGATGTTTCCATGTAAGGTTTTGGGGTGTTTTTTTGGTTTTTTGTTTTGTTTTTTTAACATATAATGTTGTGATTTGAATAGGAATGGCCCCCATAGACTCATGTGTTTGCTTAGCCCATAGTGGGTGGCACTACTAGGAGGTGTGGCCTTGTTGGAGGAATTGTGTCACTGTTGGGGCAGGCTTTGAGGTCTGCTAGGCTCAGTGTGACATTCACTTCTGCTGCTTGTGGGTCAATAGAACTCTCAGCTCCATGTCTGCCTGCATCATGCTGTGTTTCCCATCATGTTGATAATGGACTGAGCCTCAGAACTGTAAGCCAGCCCCAACTCAATGTTTTCCTTTATAAGAGTTGCCTAGTCATGGTATCTTTTCACAGCAATAAAACCCTAAAGCAGTATATTTTTATTTTCTTTGTATTGCCTATGTGTATAAATTTGTACTGTGTTTATGCCTGCTGCCCTTGGAGGTCAGGAATGGGTTGACTTCTGAATTAGAATTGCAAATAGTTGTGAGCTACCATGTAGATTTTTGGAATCAAAAACCAGGTCCTCTGTAAGAACAAGAGCTCTTAAGCACTGATCCATCTCTCCAGCCCCAATATTTTATTTTATTAAGTGTGTGTGTTGGGGTGTATTATGTGCATAGGATTTCAGTTCCCCTTAGAGGTTAGAAGAAGGCATCAGATCTCCTGGAGTTTTAGTTACAGACATTTGTGAGGTAGCTGCTCAGCGCGGGTACTGTGGACCGAACATAGGTCTTCAAAAGCATTACACACTGAACAACGGAGTGACTTTCTGGTTCTTGTTTCCTTTGGCTTTGCTTTAGACAGGGTCTCTAGGCTACTGTAAGGATAACTGAACTTCTTACCCACGTGTGTAGAAAGGGTTATGGCAGTTTTAACATTAGAACTAATTGCTCTGCTCCTCTTACCCCTCCTACCCTCTCTTACCCTCCTCCTCTTTTTTCCTCTCTGTTCTTGCTCCTATCCCCCTGCTCCACATGCCCATGGCTGGCCGCCTTTCCACTCTTCTCTTCTCTCATTAAACCTTCCATGTGGGAAAAAGACCAAAACTAATTGCTCTTTGGGGGAGAGGCTCGAAAGATGATCAAGCAGTTTAGAGTCCCTTTAACAGAGGCCTCAGATTGATTCCCAGTACCCATATGATGTCTCACAACCATCCTAACCCCAATTCCAAAGGATCTGATGCTCTCTTCTAATATCTACAGGCAAGAGTCATGCACATGATACGTACTTGGAGCCAAGATACTCTGTATAAAATACACCTAAAACAATAAAAGTGACTAACTAGGCATGGTGGTACACTCCTTTGTTCACACTAGAGGCAGGCAGGCAGAGGCCAGCCTGATCCTCCATAGTGGGATCCGGGACAGTCAGAACTACAGAGTGACACCTCCCTTGAAAAAGAAGTTTTTGTTTGCTTTTGGAAATAGGTTTTTTCTGTTTCCCTGGCTGTCTTAGAAGTCACTGCTAGGCTGGAACTCAGCTCTGCCTGCCTCTGTCTCCCAAGAACTGGAATTAAAGGCATGAGTTGCCACCTCCCTGCTTCAGAGACTTTTATTTATTTATTTATTTATTTTATTTTTTTTTTGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCAGAGACATTTTCTTAACCAAGATTCCTTCTTCTCAGATAACTTTAACTGTGTTACACTGAAATAAAACTAGCCAACACACTGGCCTTTCTCTTTTTCCTTTTTGTTTCTTTGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGGGTGTTTAGATAGGGTCTTACTATGTATTCTGGCTGGCCTGGAACTCAACATGTCACCCAAAGCAGGCTGACATCTGCCGGCCTCTGTCTCCTAAATGCTGGAACTTGAGGTGTGTGCAGTCTTGGCCTGTTTTTACTTAATTTTTTATTGCCGTTAACATTCCATTGAATAGTTGTGTGAACATATATTTATCTTAGATATATAATTTGTTTATATGGGTCATGTGTTAATAATGGTAGATAAATTGCCAAAGCTTTATGAAACTGACTTAAACCATGTTAAAGTCCTTAGTGATGTTCTAGTTTGGCTGAGTGACATCATGTTTCCGTTTGACACTGTCTCTCCGTAGTAACCATCCTGGTAGGTGTAAGGTACTGTGCCTGATTTTTGTTTAAGATTGATTTTATGAGTTTTTTGCTGCGTACGTGCACACACGCACGTACAACAAGTGCATGCCATGGTATACTTTGTCTATGATGGCTAATACTGAACTATTACCTGCTCTTATTTCTTCATTTCAATTTTTAAAATGCCAATAAATTATCATCTATTTCCTTACAG
Seq C2 exon
ATAATGGAAGCAAAATCAAAAATACTGCTTTTACAAAACAGAAAAAGGAATGCCATCAGAGAAGAAAATGAAAAAAAATTATATGAATCATCAAAAACACTTTCAGGAAATACAGGAGAAATACCAGAAAAAAAGGAAAAGATTTCAGAAATAATAAAAGTTGCAGCAGACTGTAGCCTAGATACATCATCAGAGGAACGGAATGTGAATTTACCTTGTTCTGTGGCAGCAGTATCTGATAAATTTCAAGAGCAACTAGGAGACAAAAATTCAGAGGAATTTGATGCATCTGTTGTACTTTCTTTGGATCCAGGTTCATGGCCCCGAATTTTGAATATGAAACAACGTGAATTTCTTGTCAAAACAGAGCCACCTCAAGTAAGAAATTTTAATTTTCCAAAAGACAGTATAGGCAAGAAGTTTTCAGAAACATACTACACACAGATTCTTCCAAATGGTGAGAAGACCACCAGATCCTGGCTACTCTATTCAGTCTCTAAAGATTCTGTGTTTTGCCTATATTGCAGACTCTTTGGGGAAGGAAAAAATCAACTGAGAAATGAGAATGGGTGCAAAGATTGGCACCATTTGTCACATATTCTTAGTAAACATGAAGAAAGTGAAATGCACATCAACAATAGTGTTAAATATTCAAAATTTAAATCTAACTTGCAAAATAAAACCAACGAAGCTACAGAAGGTGGGGAAAATATTGTGCAACTGTTGTACATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220:ENSRNOT00000047731:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.9),PF064679=zf-FCS=WD(100=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]