MmuINT1003312 @ mm10
Intron Retention
Gene
ENSMUSG00000035875 | AI182371
Description
expressed sequence AI182371 [Source:MGI Symbol;Acc:MGI:2138853]
Coordinates
chr2:35084046-35085368:-
Coord C1 exon
chr2:35085171-35085368
Coord A exon
chr2:35084723-35085170
Coord C2 exon
chr2:35084046-35084722
Length
448 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CTTCCTATGGGGTCATCCAGCCA
3' ss Score
2.35
Exon sequences
Seq C1 exon
CTTCTACATACAAACATCCAATGATAAAAAAATGCTGTTACGATGGGGCCAGATATAACATACATGAGACCTGTGTGCAGCGAGCTGCCCGTGTGAAGATAGGCCCGATCTGTGTCAAAGCCTTCACTCTCTGCTGTAACATGGCACACCAGATCCTAGAAAACAGCACCTTTAAGCACATCCATCTGTCAAGTCACT
Seq A exon
GTAAGTATGACATTTTCTATCAGAACTTTGCCAAATATGGGTAATTTCTAAGAAAAGCAGTTTTCTTCCCCCACCCCCCAGCTTTCTCTAAATTACTTCATTTTAAAAATTGATTATTCTATTTATTTACGTTTCAAATGTTATTCCCCCCTTCCCAGTTTCCTCTCCACAAACCCCCTATTCCCTCCCCCTCCCCCTGCTTCTATGAGGGTGCTCCACCCACCCACTCCTACCTCACCAGCTTAGCATTCCCCAACATTGGGACACCAAGCCTCCATAGGCCAAAGGGCTCCCCTCCCATTGATGCCAGATAAGGCCATCCTCTGCTACATAAGCAGCTAGAGCCATGGGTCCCTCCATGTGTACTCTTTGGTTGGTGGTTTGGTCCCTAGGAGCTTTAGGGGGTCTAATTGGTTGATATTATTGTTCTTCCTATGGGGTCATCCAG
Seq C2 exon
CCAACCATCAGGCAGAGCACGGGGACCCCCAATGGAGGAGTCAGGGGAAGGACTGAAGGATCTGCAGGGGTTTGCAAACCCCATAGGAAGGAAAGCCGTTTTCATGTCCTTGTTGCAACTAAGAGTTGGAAGGCAGACGACTTGTAACGCCCAGATGAAAGTCTGTTGTTTTTCTCGGTAACTGGAAACACTATAGCACCCAGCAGACAACACCTGTCCAGAGTCAAGGCCCCAGGAAACCATAGGCAGCTCGTTATGCAGACTGGAAATGGCCTCCGGATGACAAAGTGCCATGATTCTGTCACAGTCACTAAAAGCTGAAATCTTTCTGTGTCAGCCTTACTAGATGTTTCAGAATTAAAGGACTTTCTTAATATTCTCAAAACCTTAAGGACTCTCATTTATAGATTGTCTTTAAGAAAACAAACCATGGGAATGACACATTTCTGATTTTACTCTTGATTATTTTTTAATTAGTTCTTTTATCTGTAATATATAATATTACACAGTATTAGCTATTATGTATACATTCTACATGTATTATGTTATGCATTGTATATGTATATACATTTGTATATATTATATGTGTGTGTTATGTCTATATTGTATATTATGTATGTATATATTATATAATAATATATATTGTGTAATAATGTTATATAATATAGAATATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035875:ENSMUST00000045776:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0182113=ANATO=WD(100=52.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATCTGTGTCAAAGCCTT
R:
CGAGCTGCCTATGGTTTCCTG
Band lengths:
348-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types