MmuINT1006209 @ mm10
Intron Retention
Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:36007244-36010701:-
Coord C1 exon
chr3:36010599-36010701
Coord A exon
chr3:36007964-36010598
Coord C2 exon
chr3:36007244-36007963
Length
2635 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
AGAGAATGTTTTCTTTGCAGTTC
3' ss Score
5.36
Exon sequences
Seq C1 exon
GCTTCTGACCAGTTGTGCATCTGTCTCTCATCTCTCCATTGACTGCTGTCCACTGCAGAAAGAAGCTTCTCTGATGGATGCTGAGACGAGCCCAGGTCCACAG
Seq A exon
GTACAAACACAATTACTTAACTGACACCATGCCAAGAGTGGGTTCTACCCTCCAGCCTATGACCTACCTACCCAGCTGTGCTGGGGTTTTTTGTCAACTTGATAAAAGGTATCATCACAGAGGAGGGAGCCTCAATTGATAAAATGTCAGGAGCCACCATAGGAGAAGCTAAAAGCCAGCAGGTGATCTTCCTGAGATGGGTTTGCCTTGGATTAAAAGCTACGATGGCTCCGGTAGGCAAGGCCCAGGAGAAATCCATTTTAGGAAAGATTCCTGCTATTAATATGCTTTTCCTGTTATTATTATATATATATAACTATCACTAGGTATTAGCCCACCCTTTTGAGCAGATCTCTGCAGACCTATGAAGATGTACTATCTTGTAGTGATGCTATATAGACAAATAGATAACAATTCTATAGAATTCCTGATTTGATTCAAATAATTTTAGGAAGAAAGTTATTAGATATTTATTTATATTTAAAATGGTATCCCCTTTCCGGATCTCACCCCCAGTAACCCCCAATCCCATCCCCCCTCCTTCTGCTTCTATGAGGGTATGTCCCACTCACTCCTGCCTCCCCACCCTCACATTCCCCTACACTGGGGCATCGAGCCTCCATGGAAATAAGGGCCTCTTCTCCCATTGATGACTGACTAGGTCATCCTCTGCTACAAATGCAGCTGGAGCCATGGGTCCCTCCATGCGTACTCTTTGGTTGGTGATTTAGTCCCTGGGAGCTCTGGTTGATTGATATTGTTGCTCCTCCTATGGGGCTGCAAACCCCTTCAGCTCCTTCAGTCCTTTCTCTAACTCCTCCATTGGGGACCCTGAAAGTTTTTAGAGATGGTCTTAGTCCCTAGAAAGATGTAATAAAGTTATAACAAGAATAGTATATGCCCACTTCTCAGAATAGTAAGTAAAAACTGCATAATAAAAAAATACAATGAGCTTTCATAATCACACTAGTCAGAGAAATAGACTCAGGACAATTTTGTGTTCAAAGAAAAACATTTAGGTCCAAGGATAAATTCACAGGTGTGCACTATGATAAGGCAAGGCCATGTAAAAACTGTTGCTTTGAACTTTTAATGAGTATAATATGATGAAACACTGCTTTAAACTTAATATCAGCATTCTTCTGTAACTCCTGTTTTATATAACATTTTATCTCTGAGGTAATATTTTTAAAAACTTTTTGTCTAAGAAGGTATAAAAAGACCAGAGAAAAGAAATAAAGTTGTCAGCTGTTGGTTGAATGGTTTGGCTTGGGGAGCTTTGCCCCATCCATCCATCCATCCATCCATCCATCCATCCATCCACCTACCCACCCATCCATCCATCCATCCATCCATCCATCCACATGTGTATGTTTGTTTGTCTATATGTTTGTGTGTACAGTATATGTGTCTATGTGTAAGCATGCATGAATACTTGTGGAGTTGATTGTGACAGACAGTGGAGACAGGCCAGAGTGAGGGTGTATGAATGATTGAATGTATATGTGTCTGTGCATATTTGCCTGTATACCACATCTTAATTCTTTTCCTTTCCTTCTTCTCTGGTTCACAAAGAGTTAAACAGCCAGAGCAGCTGAAGGGCTTCTGGCTGCCTGGCCAGAAAACGAAGTACTAGCAATAAATCCTTTCACTTAATTCCCTGTTGCTAAACAGTGTGTGTGAATTGCCAAATATTAGCACTTATTAAAGCCCAAGTAATAGAATTAAGCTTTTAGCATTTAATGAAGCACAGAACAGTAAGAGAGAGTTAAGTTTCTCCACTGTTTATTTAAGCATAAAGAGTTAAATAAAGCACAGAGAGCTATAATGTTTAAGAAAGCACAGAGTTAAAGAGGGAAATAAAAAAAGCCCATGTTTTTAAACCATAGAGTAAGCAAGAAAGTTTTTATAAGCTTTTTGAAGTTATCAGCAAGCACTCAGTATAGTTAGAGAGCTAGCGGGCCAGAGACCATCAGTCTTTAAAGCAATGTTTGACACTGTGTCCCTCTTCAAGCCCATTCAAGGCTGGGCAGGTTCCCAGCAACAAAATGCCTCCATAATATTGCACTGTAAGTAAGGTAAGACATTTTTTTTTCAGTTAGTGATGGATGGGGCAGTGATTGATCCACTACCCAGCCAATCGATTGCGGATAGTGTCAGTCCCAGACTGGTAGTCCTCAGTTCTATAAGAAAGCATGCTAAGCAACCCACAAGGAATAAGCCAGTAAGCAGCACCCCTCCATGGCCTCTGCATCAGCGCCTGCCTCGAGGTCCCAGTCCTGCCCGAGTTCCTGTCCTTACCTCCTTCAGTTGTAAAACAGTGATGAGAAGTAGAAGCCAAATAAACCCTTTCCTTTCCAAAGTTGCTTTGGTCATGATGTTTCATGTTTCAGCACTAGTAACCCTAACTTAGATACCAGCCACAGGCTTTTGACCAGGATTACAGTACCAGGAACCCAGTTTCCTCCTATGGACAGACCTCAAATCCAATCAGAAAGCAGGCATGTCACTGTTGCACCAGTGGGACATGTTAGGTCCATCTTCATTAACACTGATGAATTCTTTTAATTTTTTAAAACTAACTCATTGTCAATTCACTATAAAGTCTTTAACACAGAGAATGTTTTCTTTGCAG
Seq C2 exon
TTCCTGATGAATCTGAATCTGGACTCCGTAGAACTTCTCCTCTAGAGTTTACTCATCTATGAAGCTAGAGTCTTCCTAGACAACCTATCAGAACATGTAGAGATTTTAATATAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTGAAATATAAAATTTACTTTAATATGTTACTTGGCTATTCATAAAATTTTTTGATTATTTTCCAATATATAGGTTAAACATTAAAGAATATTTTTGTATCAGAGATTATGAAAGAAAGATGAAATTTTAAGACCTGTAAGACATATAAAGTACTCAGAAATTGCTGGTTGTTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAACAAAGAAAAACAAACCCGGGTATGCCCTGTAGTTAAAGCATTCCTGAGAACAGCTTGACCATAAAGATAAAGAGGAATGTGAGGACATAACAGGGCTATCTGAACTGAGTCAGCATTGATAAACATCCAACTCACAGAACTCTGACACCCTGATCTGCACGTACATGTAATTTTTCTGCTGATGTTTGAATAAGCCAATAGTGTGTCTCTATGCTGAATTCCCCACCCCTAAGCCCTTTAACCCATAAAAACCTCTAGCTTTTGAGCCTTGTCGTCAAATCCACTGTCTCCTGCGATACATTTTGACAAGGAGCTCCGCCATTAAACTACCTCGTGTGTTTACAGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696:ENSMUST00000200469:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types