MmuINT1008054 @ mm10
Intron Retention
Gene
ENSMUSG00000025197 | Cyp2c44
Description
cytochrome P450, family 2, subfamily c, polypeptide 44 [Source:MGI Symbol;Acc:MGI:1888897]
Coordinates
chr19:44007024-44012470:-
Coord C1 exon
chr19:44012283-44012470
Coord A exon
chr19:44007166-44012282
Coord C2 exon
chr19:44007024-44007165
Length
5117 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
GGTCTGTCTCTTGGTTCCAGGGC
3' ss Score
8.36
Exon sequences
Seq C1 exon
CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG
Seq A exon
GTTAGATGTGTTTGCAAAGATGACTGGGAAGGAAGGGGTTACCATGGTACCTGCTGGGCTTAGGCAATGGCTCTCAGTTCTGGGGCTGGAAGAGAAACAGGTTAGAGTCACCAAAAGAACACAGAGCCACAGACATTATGTTACCTCTGGGCCTTGTCTTCGGCTTTGTAGAACATGGCACGCTGACCTGAAGTTTCCCAGACCCCTCATGTCACATGCACTAAATGAGCAGTGCCTTCAATCCAGAAGAAGCCCACCTGGTTTTTCTTGGTGGGTTTTAAAAAGGGCCTCACTGTGAAGGTGCAGCGGTTCTGATGTTGAGCCAAATATTGCCTTTAATCCCAATGTTGGGTTACTCAGTTAGGCTATTGCTGTCCTCAGAGTCAATCTGTGCATGCCAGGGTTGCAGGAAGCCTTCAGCATTTACATTTAAGGGGCTCCATTGCTCCTAAGGTGTAGAAAAGATTCCAAATGTGGCCATAAACACTGCCACACTCAAACCATCCTGCCTGTCCAGTCTGCTAAAGTGTGAGTCTACACAGCTGACATGGGACTGGACCTTGAAGTCAGTTGTCTAAAACCAGGATATACATCATAAGAAAAAAACCAAGGGCTCGGTGGGTGAGGGAGAGCACGTGGTATGCAAGTGCAAGGACCTGAGTTCAGATCCCAGCACTGGAGTATAAAGCCACAGGTAACCCCGCACTGTGGTGGGCAAAGGCAGGAGGGTCACTGGGCCTTTCCTTTCTTTTTAATAGACCAAGTCCTCACTACACTGCCTCAACTGACCCCCATCTTTCAATTCTTTAACCTTAATCCCTGGTGTGCTGAGAATACAGGTGTTCACCACCAGTCCAGCTAAGAAAACTTTCATTAATAAAAAAATTACAAGGTAAAAGTACTCAGGAGTAAGCAGAAAGTTTGCAAGATTTTAAAGATATTTTCAAATTTAGAACGCTAACTTATACAATTTTTAAATCAAAGGACGTTCTGTCTTAGGCTAGGAAAATATAATTACATGTTTATATTATAGGTAAAAGATGTATTTATATTAATATATAAATTAATATTAATAACCATATTTTTCTAGAACCAAATTAACAGATTCCAATTTTGATATGGAATTTTTAAAATATTTAAAATAAATTATAGGAGCTGGGCAGTGGTGGTGCACGCCTTTAGTCCCAGCACTTAGGAGGCAGAGGCAGGTGGATCTCTGAGTTTGAGGCCAGCCTGGTCCACAGAGTGAGTTCCAGGGCATCCAGGGCTACACAGAGAAACCTGTTTCAGCAATAAATAAATAATAAGTAAGTAAAACACAAATCCACAGGTTTTTTAAAAATTTATTACACATTTTATTTATTTTTATGTATGGTTATTACGAATGGTTAGTGAATATGTAAAATAAACCCACAGAATGGAATAGACTGAAAATAAAAATTATAAGGATTCATGTTTTAACTTATCATACTATATAGACTGGATGTTTAAGAGAACTCTTAAGACAGGGTTTCACCATGTAGTCTTGGCTGGCCTAGAACTCACTGTGTAGTCCAGACCGTGGCGGAGCTGGCAGAGTCCTGCCTGAGGGATGGCAGGCATTCTTGCTGGAAGCAGCAACAAAGGTAACCTCTGCAGGAGGCTGTGTGGCCACAGCTGCAGGCGTTCACAGCTCCAGAAGAGCATCCCCACTGCTAAGAAGTTTTATTTTGTGCAGATTTTCCTCAAAATAAGAATTTCTTATATATTATAATTTTTAATAAATCAAAAGACTTATTCTGTATTAGGCTGGGAAAATTTATCTACAAATAAAATAACATGTTTATATTACATATATAAAATGTATTTATATTAATACATATATTTTCTGGAACCAATAATAGATTCCAATTTTGATATGGAATTAATTATTAATAATTATATTATATATAATAGATAAATATATGTACATACATATGTGCATATATATATATATATATATACACATATACATACTTAAAAGCTAGATGTTGAAGCATGCACTTATAACCCCAGTTTTTGGCAGATGGAGACAAGAGAATCAGGAGTTGAAGGCCAGCCTCAGTTACATAATGAGTTTGAGACTCTGACTCAAAGCACAAACTAAAAGAATGTAGTTTATATCTGAGGGTTAGAAATGTTCTGTTTTAAAAGATGCTCACTAACCATGGGAATTTAAAATTCTGCTATTCCTATAAACTAGACTAGTGTGCAAGCTACGTAATACCACAGGTTCTATGTGGAAACAGTGGGCCAGGCTGTGCATGTCTTGTTTTCATTTCATAAGGTATCTTCCAGGGGACAATTATGATCTGGTAACAGTGATGATATCAAGCTAGAAGCCTGTGAAGAAGGAGGGAGGAGCCAGTGGGATGGCTGAGTAGGTAAAGGTGCTTGCTGCCAATTAGTGACCTGAGTTCAATCCTGGAACCCAGGTGGTGGAATGAAAGAACTGCCCTCTGACCTCCACGTGCACACCGCTGCAGGAGGATAAACAAACAGATAAAATGTAAAGGTATTTTAATCCAGCAACATGGCTGCTCTGATCGCATCCAAAGACCTAGGTCTGTGATCTGGCTGGAATGTAGACAGGCCTTTAGAACACACCTGCAGTCCCCGAATATGAGTCTAATTAAGGGGCAGACAAAGTGACAAATCGGAGAAAGATTTGACAGAATGGGTCAGAGATAGGATACGCCCAACTGTCAGAAGAAAGGCTATTTAAGGTCAGCCCTGGGAGGATCAAGGGGGGTCAGTCCAAATGTCAGTGAGCGGGAGTAGGGTCTGTGGAGAGTCAGTGTAATGAATGTAGTGGACTTGAGTTCCTGTGTTCAGTGCAGGTCAGCAGAGGGAGTAATTCAGTGAGAAGCTGAGAGAAGCCTAATTGAATCAGTCAGTTTGGAGAGGAGTTGGAGCCAGGACAGCTGAATTGAACCAGCCAGCCAGAGCTCAGAAAGAGCTAGAAAGGGTGAGCTTATTCAGCGGTAAGTCTCCGAGATGACAATTACATCAGGCAAATACAGGTTATTTTTATAGTAAATGTCAAAAATAATTTAAGAGAACAAGAGAGAAACATTTTTGCTTTATAGCCTTCTTCTGCACAGTACAGTTTTGCACCGCACTGTCATTTCCAATTCTTGCGCAAACGTTTAAAGAAACCGGAAGTAAAAGCAGAAAAGCTTTTGGCTAAGCTGGGTGCTCCAAGACCAGACAGAGCTTGATCCTGGTTCCAGCTGTGCTGCTTGCCATAAGCAAGCGTTTCTCCTTTCTGATCCTCAGCTCCCTGTTTATATAACGTGAGCCAAAAACGCATCCTCTCTCTTCCATTGGCATGAGAGTTAAACGAGGTTTATAAACAGCTCCGCACGGGGTCGGGCAGATGCGAGGCTTCCTGCATAAACAGTGGCCGCCGTTAGCATGCCGTTAGCATGTCATCATCAGGGCTACAGCTTCTTGATCACTCCCCACTCACAGCCCTTCTCTACCAGGACCTTTGCATCTAGGCCTACCAAATAGGTATATACGTTAAACATTTTCTGGTGATAAATTTTCTGGTTAAGTATTTTGATTTTATAATTGTCAATGCTGAGAGCACCATTTTGCATAAATGTTCAGCACAAAAAAGCAGGAGGAGATTTACTGCTATTTCAGAAGTTATTAAAAACCCCTACCCTACCAAAATTGCTTTAAACAATTTCATAATGGCACTCAAGTTGGTGACTCAAACAGCAAGTTTTAAAACCAGCCTTTTTTTTTTTTAGATTTTTTAAAAAAGATGTATTTATTTATTATATGTAAGTACACCGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCCAATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTCAGGACCTCCAGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCACCTCTCCAGGCCCCAAGCATCCTTTCTAACACAATTTAAAGACACATTAACTTTAGACTTGCAGGCTGAAGGAAGACAGAAGGGGGAAGCCTGAAAGTCTTTGCTGTCTATAGTTAAACCATTGTTTCTATGAGCACAGAAAACCTGTGGGTACAGGAGGAAGATTGCAGACCAGAGCATGCGGTTGTCTTGCATCTCAGCTGAGCTGTTTCGGGCCACGTTCTCCGGAGTTGTGTGGTCTGACAGCATGCTCAGTGCAGGGCACACGCTGTGTCTGGATAAGACGGCAGTGAAGCCACAGGACGCCACCCCTGTAAGGATGGTGGGAAATCCCCGATTCCTTACATGTTGAATTTGGATGACATTTTTGGTCCTTGTGTGTGTTCATGTGGCTAGCTCGCATACAGTTCCCACTCTGATAGCTTGCTTTATATTGCTTCGATAACGCTGTGACCAAAAGCAATTTGGGAGGAAAGAGTTTATTTACAGTTTAGCTTACATATCCCAGGTCACAGTCCACTGAGGGAAGCTGAGGCAGGAACTCAAGGCAGAAACGGAAGCCATGAAGCAGTGTTGCCTACTGGCTTGCTCCTTCTGGCTGATCCAGTTGACTTTCTTACCCGCCCCAGGACCACCTGCCCGAGGGCGGAGCTTCCATAGAGGGCTGGGCCCCCCACATCAATCAATCCTTAGTCAAGAAAATGCCCTATATACAGGCTTGTATTTTCTCAGTTGAGGATCTTTTTATTACGCCATTTTACAAGTGAGGGGAACGAGGTTCCATTGTACAGACCCGAGGCTCAGCGGCTCATTTTCTTCCACTTACATCAGAATCCAGAGAGGAGGAAAAACAACAAAAAAAGTAAGCATGCCAAAGTTAAGTCTTTCAGCTTGAGGCTGAAGCTCCAAAAAAAGCGCGTGTGTGGGCACTGTGAGCTGCCGCCTCAGATTTTCAGCAACTAATTCTTGAATGCTGACTGTCACTCTTACCACAAAGAACTGCCAGGCCGGTAAGTGCGCGTGTAGCAGCAGTAACCCGAGACAGCCAGGGACTATGTGAGTATTTCCCTGTTAAATCCACTGTTACTCAGAGCATTTGAGTGGCTTGGGAGCTATAGGCTAACTGTGGTAAAGCACCTCCGTGGTCTGTCTCTTGGTTCCAG
Seq C2 exon
GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025197:ENSMUST00000026211:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types