DreINT0054238 @ danRer10
Intron Retention
Gene
ENSDARG00000013524 | cyp2ae1
Description
cytochrome P450, family 2, subfamily AE, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-090312-107]
Coordinates
chr23:42694888-42697852:+
Coord C1 exon
chr23:42694888-42695075
Coord A exon
chr23:42695076-42697710
Coord C2 exon
chr23:42697711-42697852
Length
2635 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
AATCTGTTTGGTTATTACAGGGT
3' ss Score
5.4
Exon sequences
Seq C1 exon
AGAAGGTGCAGTCAGAGATCGATCAGGTGATTGGACAGACCCGCCAACCACTGATGGATGACCGGACAAATCTGCCGTACACCTATGCCGTGATCCATGAAATTCAGAGGTTTGCCAACATTGTTACCTTTACGCCTCCCAGAGTGGCCAACAAGGACACGACAGTGGGAGGACAGCTCATCCCAAAG
Seq A exon
GTGATTGCATCCCTGTGTTGTGTAACAAAGACTGCAATAAGTAACTAGTTTCTATAATTAAATACATTTTCTAAAGTAAATCTGGCTGTGCGTATACTCCTACACTATTGGGTTTAACGTCTACATCTAACCCCGCCCCTCACAGTGACATCACTCTGTTGAGTGCTTGTGTCCGAAAGTGCATGTGCGAGTCACCTACTTCAAGAAGGGTGAGCACAAATGAAGCTACAAGTAGGCGGGGCTAACCATCCAAAAATGGGCAAAGAGGCGGGGCTTGGGCGGAGTTGGGTTTAACGTCTACATCTAACCCCGCCCCTCACAGTGACATCACTCTGTTGAGTACATGTGTCCGAAAGTGCATGTGCGAGTCACCTACTTCAAGAAGGGTGAGCACAAATGAAGCTACAAGTAGGCGGGGCTAACCATCCAAAAATGGGCAAAGAGGCGGGGCTTGGGCGGAGTTGGGTTTAACGTCTACATCTAACCCCGCCCCTCACAGTGACATCACTCTGTTGAGTACATGTGTCCGAAAGTGCATGTGCGAGTCACCTACTTCAAGAAGGGTGAGCACAAATGAAGCTACAAGTAGGCAGGGCTAACCATCCAAAAATGGGCAAAGAGGCGGGGCTTGGGCGGAGTTGGGTTTAACGTCTACATATAACCCCGCCCCTCACAGTGACATCACTCTGTTGAGTGCTTGTGTCCGAAAGTGCATGTGCGAGTCACCTACTTCAAGAAGGGTGAGCACAAATGAAGCTACAAGTAGGCGGGGCTAACCATCCAAAAATGGGCAAAGAGGCGGGGCTTGGGCGGAGTTGGGTTTAACGTCTACATCTAACCCCGCCCCTCACAGTGACATCACTCTGTTGAGTACATGTGTCCGAAAGTGCATGTGCGAGTCACCTACTTCAAGATGGGTGAGCACAAATGAAGCTACAAGTAGGCGGGGCTAACCATCCAAAAATGGGCAAAGAGGCGGGGCTTGGGCGGAGCATTTTGCTTATTTTTATTCTTAATTTGACAGGGACAATGAACAATTAAAGGTCCGCCCTAAAAGAAGCAACATAGCTAAATTTCAACTGCAGTCCCTTTTACGGTTTTTCTTCGGGAAAAATGGAGGCCAGACTGGTCTGTGTGCACAGTGCAAGGCATGCCACATTATTTCATAATTGTAACTAATAATCCCAAAAATCAATAGACTTTATAAAGCCACATTTATAAACCATATATATGATATTTATGCAAAGTACTATGGCCAAGAATCAGATGGTAATTGTGACAGCAAACAGCAGATACCTGTTAATCAACGTCTTTAATTTTTCTGAATTTTGATGAAAACATTCATCCCCTCACATTTGTCATAAAGGGTTATAATAGTTATATACAGGGCTTAACATTAACTTTAATGATCACCAGCCACTGTGGCTAGTAGTTTTCCAACATTACTAGCCACTCGCCATTTTCACTGGCCACAGTTTAATTGTTGGGAAAATATATTTTATACACATCATTATGACTTTGACATGCTAAAATGACTTGATTTAGAGTTTGCGTTATCTCTACATGCCTCCTCATTCATTTCACTTTTTGTGTGTCGTGTATGAGCTTGCTCAATAATCATGAGCAAATGGGTCAGGGTTTCATATATTACAATTAGTTTTCATAATTTTCACAGCCCAAAATAAAGGATCCACCCAATTTATCTCAGACCACACCATAAATAAACAGTTCATTATTTCTTAGCCACAAATTTTAAATGTGCCAAAACGAGCAAAATATAGCTGAATACTATACTTTTTATTTAACAAAACATATGCACAGTCATACGTCCTGGCTAAAGGTCCCAGATCACCAGTTAACTACACATAAATGGGGAGTTAATCTCCGATTAAAGCAATGTTATTGTAAAAAAATTATATTTAAACCATATTAACGCAAAAGAAAGCAGGTAAAAAACATACTGTGTGATAATGGTTAAAGCGAAAGCAACTGCCGCTGCTTACAATAAGTCAACTCTGGAACTCTTGATAGCAGCAAGACTGTAGGTGCAGGTTCCTCCCTTTTTGTCCAGTCTATTTGAAAGAGAACCGATCGCATCAGTTGTGTATCTAGACACAGTCGCTTCACAAAAGGAAACGGGAGCGCGCACGCATTATAAACAGTCACGCGCATTACCTCAGCTGTTTGCGCGAGTGATTATCCTCTCATTCGGTATTCACCTGCTGTGCTCGCACAAAGTTGCGGAAGCAATTATTTTTGATGCTTCTCGATCGCCTGTGCATGCATATTGGACCATCCTTATTGTCGAACCCTGCTTTTAAGAATTATTATCTGGGAAAATTATTTTCAACCAGCCAAAGTGGCTAGTGGGAGTGTCTGTCTTACCAGCCACCGCCGAAATCTACTAGCATCTGGCGGGTTGGCGGGTGTTAATGTAAAGCCCTGGTTATATACACCAAGACTTTTTTGTACCAGGCTGTAAACACCTTTTTTTGGCTCTAAAGCTGGACATTTTAAGAATTTTATATATATATATATATATATATATATATATATATATAGGAATAGAAAAGAGCATGTTTTAATGAAGAAAATCCATAAATCTAATACTTCACAATCTGTTTGGTTATTACAG
Seq C2 exon
GGTGTGATTGTTTTGCCGATGCTGAAACCAATCCTACTGGACAAGAAGGAGTACAGCACTCCATACGATTTTAACCCGGATCACTTTCTGGACCAAAATGGCAAGTTTTTAAAGAAAGAAAATTTCATCCCTTTTTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013524:ENSDART00000035654:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]