RnoINT0044367 @ rn6
Intron Retention
Gene
ENSRNOG00000012458 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:RGD Symbol;Acc:2475]
Coordinates
chr1:213520287-213521113:+
Coord C1 exon
chr1:213520287-213520474
Coord A exon
chr1:213520475-213520971
Coord C2 exon
chr1:213520972-213521113
Length
497 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
GAGCCCTCTACTTCTCCTAGGGT
3' ss Score
5.4
Exon sequences
Seq C1 exon
AGAAACTTCATGAAGAAATTGACAGGGTTATTGGGCCAAGCCGCGTCCCTGCTGTCAGAGACAGACTGGATATGCCCTACATGGATGCTGTGGTGCATGAGATCCAGAGATTCATCAATCTTGTCCCTTCCAACCTACCCCATGAAGCAACCAGAGATACTGTGTTCCAAGGATATGTCATCCCCAAG
Seq A exon
GTCAGGCAAGAGTTGGAAAGTACTCCATTGGCACTGTTCTATTGGTTTATCACCTTGGTTGCCCTTCAGGATAGAGACTCAAGGGCACTGTTGACCAGCATATATTGTTAGATGTGGGAATCAAGCCAGCATTCATTCTTGCCCTGCAGAATGTTTCACCCAAAGTCACCCCAATAACCTCATGACCAAAGAAATGAAAGAAATGGAAAGTGTCACCTCAACTGGTCCAGAGGACTTGTAGAACTCTCTAAAACTGAGATCCCATGAAAGCAGCAACCCAGCCTGGGACCCGTCCTATCAAAGATACAGGGCCTTCCTTTTCATTTAGACCTGATCTGATCCCTGTCTCTTTTTCTAAGTCATCCTGAAATAAACAACACTACAAATTAAAAATATGCTAGCCTACATATGTAGAATTCCAACAGCCCTGTCCGCTGAGATCCCCCAGATAAAAGCCTGTGTTTAACCTGACTGATAGAGCCCTCTACTTCTCCTAG
Seq C2 exon
GGTACAGTTGTGATTCCAACTCTGGACTCCCTCTTATATGACAGCCATGAGTTTCCAGATCCAGAGAAGTTTAAACCTGAGCATTTCCTGAATGAAAATGGGAAGTTCAAGTACAGTGACTATTTCAAGGCATTTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012458:ENSRNOT00000016883:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTTCATGAAGAAATTGACAGGG
R:
CAGAAAATGCCTTGAAATAGTCACTG
Band lengths:
326-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]