MmuINT0045018 @ mm9
Intron Retention
Gene
ENSMUSG00000025479 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88607]
Coordinates
chr7:147958918-147959670:+
Coord C1 exon
chr7:147958918-147959105
Coord A exon
chr7:147959106-147959528
Coord C2 exon
chr7:147959529-147959670
Length
423 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
AGAACTTCTAATTCTTCCAGGGT
3' ss Score
5.99
Exon sequences
Seq C1 exon
AGAAACTTCATGAAGAAATTGACAGGGTTATTGGGCCAAGCCGTGCCCCTGCAGTCCGAGACAGGATGAATATGCCCTACATGGACGCTGTAGTGCATGAGATTCAGAGATTCATCAACCTCGTCCCTTCCAACCTGCCCCACGAAGCAACCCGAGACACCGTGTTCCGAGGATATGTCATCCCCAAG
Seq A exon
GTCAGCCATCAGTTGGAAAGCACTCCATGGGCATTGTCCTGTTAGCTTATCGCCGAGGTCGCCCTTCAGGAGACTCACCCATAGTCACTCCAATAACCTCATGACCAAAGAAATCAAAGAAATGGAAAATATCACCTCAACTGGTCCAGAGGACTTGTGAACCACTCTTAAAACTGAGATCCCATGGCAGCACAACCGAGCCTGGGACCCATCCTCTGAAAGATATCGGGCCTTCCTTTTCATTTAGACCTGATCTGATCCCTGTCTCTTTTTCTACATAGTCCTTAAATAAACAACACTGCAAATTTAAAATATGCTAGCCTACATATGTAAAATTCCAACAGCCCTCTTCACTAGGGTCTTCCAGATGAAAGAAAGCCTATGTTTTGTTAACTTGACTAATAGAACTTCTAATTCTTCCAG
Seq C2 exon
GGTACAGTTGTAATTCCAACTCTGGACTCCCTTTTATTTGACAACTATGAGTTTCCAGATCCAGAGACATTTAAACCTGAGCATTTTCTGAATGAAAATGGGAAGTTCAAGTACAGTGACTATTTCAAGGCGTTTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025479-Cyp2e1:NM_021282:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(0.8=1.6),PF095185=RE_HindIII=PD(62.5=71.4),PF0006717=p450=FE(36.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCATGAAGAAATTGACAGGGT
R:
CTGCAGAAAACGCCTTGAAAT
Band lengths:
326-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: