RnoINT0044319 @ rn6
Intron Retention
Gene
ENSRNOG00000013291 | Cyp2c23
Description
cytochrome P450, family 2, subfamily c, polypeptide 23 [Source:RGD Symbol;Acc:620370]
Coordinates
chr1:263780722-263787237:-
Coord C1 exon
chr1:263787050-263787237
Coord A exon
chr1:263780864-263787049
Coord C2 exon
chr1:263780722-263780863
Length
6186 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TCTCCATCTCTTGGCTCCAGGGT
3' ss Score
8.39
Exon sequences
Seq C1 exon
CCAAAGTTCATGAGGAACTTGACCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCTTATACCGATGCTGTATTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCCAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGAGACTATGTCATCCCCAAG
Seq A exon
GTTAGACATGTTTGCAATGGGATGACTGGGAAGGAAGGGGTACCATGGTACCTGCTGGTGCTGAGAAACTCTCTTAGTTCTGGGGCTGGAAGAGAAACCAACAGGTTAGAGTCACCAAAAGAACACACAGAGCCACAGACACTGTCGCCTCTGGGCCTTGTCATTGACTTTGTAGAATGTGGGACGCTGACCTGAAGCTTCCCAGGTCCCTCCTACTGTCATGTCACACATTAAATGAGCAGTCTCTGATGCAGAAGAAGCTCACCGGATTTTTCATGGTGGGTTTTAAAAAGGGCCTCACTGTGAAGAGGCAACGGTTCTCATGTCGAGCCAAATCATTGATTGCCTTTAATCCCAGTTTTCAGTTAAGCGATTGCTGCCCTCACGGTCAATCTGTGCACACCAGGGGTGCAATAAGTCTTCTGCACTTACATTTACAGGGCTCCATAGCTCATAGATGTAGAAAAGATACCAAATGTGACAGAAAACAAAACAAAACAAACAAAAACAAAACAACAACAACAAAAAAGACACTGCCCAACTCAAACCTGTCCAGTCTGCTAAAGTTTGAGTCTACACAACTGACATGGGACTGGACCTTGAGCAGGAACACTTCAGTAGTCTAAAACCAGGATATACATCATAAGAAAAACCAAGGATCTCAGTGGGTAAGGGAGGGGCACTTGGTGTGTAAGCGCAAGGACCTGAGTTCAAATCCCGGCACCCACGTATAAAGCCAGGCATGACATGCATATGTAACCCTGCACCGTGGTGAGCAAAGACAAGAGGGTCACTGGGCTTTTCCTTCCATTTTAGTAGAACAAGTCCTCACTACACTGCCTAAACTGACGCCATCCTTCAATCCTTCAACCTTAATCCCTGGTGTGCTAAGGTTAGGCATTCACCACCAGTGCAGCTAAGAAAACTTTCATTAATAAAAAAATTACAAGGTAAAATACTCGGAGGTAAGCAGGAAGAATGCAAGATTTTAAAGACTTAAAGATATTTTCAAGTTTAGAATGCCAAATTATACAATTTTTGCTCGAAAGACTTATTTCTGTATTAGCCTAGGAAAATAAGTTATCTACAAATAAAATTACATGTTTATATTACATGTATAAGATGTATTTATAGTAATGTATAATACTGTTATGTTAATATTAATAATATATAATATTAATATGAGTATTAATAACCATATTTTCTGAAACCAAAATAATAGATTCCAATTTTGATATGGAATTTTAAAAATATTTAAAGTAAATTATAGGAACCGGGCAGTAGTGGTACACGCCTTTAGTCCCACTTGGGAGGCAAAGACAGGTGGATCTTTGAGAGCCCAGCCTGGTCTACACAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAAACCCTGTTAGAGCAATAAATAAGTAATAAGTAAATAAAACACAAATCTGCAGTTTTAAAAAAATTATTACACATTTTATTTATTTTTATGTATGGTCATTATGAATGGTTAATGAACATATAAAATATATCCACAGAATGGAATAGACTGAAAATAAAAATTATAAGGATTCATGTTTTAACTTATTAACCATATCGATGGGATAGCTAAGAAAATTTTTCTTGGGAGTGGGGATCTAGCACAGTGGTAGAGTGCTAGCAAGCACAAGGCCCTGGGTTCGGTCCTCAGCTCTGGGGAAAAAAAAGAAAAGAAAATTTTTCTTTGAGACAGGGCTTCACCATGCAACCTTGGCTGGCCTCGAACTCACTGTGTAGTCCAGACTGTGGAGGAACTGGCAGAGTCCTGCCCCAGGGATGGCAGGCATTCTTCCTGGTAGCTTTACCAAAGGTGACCTTGCAGAAGGCAGTATGACCACAGCTCCAGAAAAGCATCCCCACTGCTAAGAACTTTTATTTTGTGTGGATTTTCCAGAAAATAAGAATTTCCTATATAAATTTTAATAAATCATAAGACTTATTCTGTATTAGGCTGGGAAAGTGTATCCTACAAATAAAATGGCTTGTTTATATTAATATATAAAATGAATTTATATTAATATATAAAAATGGCAATATTGTCTGGAACCAACTATCAGATTCCGATTTTGATATGGAATTAGCTATTAATAATTATTTTATATATAATAGATCAATATAAATATTTGTATTTAAAAGCAAGATGTTGAGGCACACACTTATAACCCCAGTATTTGGCACACGGAGACAGGAGGATCAGGAGTTTGAGGCCAACCTCAGTTGCATAATTAATTTGAGACTCTGGCTCAAAGCACAAACTAAAAGAATGTATTTTATATTTGAGAGTTAGAAAAATTCTATTTAAAAAGATGCTCACTAATCATGGACATTTAAAATTCTATTTCTATAAAGGAGAATATTGTGCAAACTACAGAATACCACAGGTTCTGTGTGGAAACGGTGGGCCAAGCTGTGTGTGTCCATTTTCACTTCATAAGGTATCTTCCAGAGGGCGAGTATAGTCTGGAAACAGTGATTATATCAAGTTAGAAGCCAGGGAAGAGTCCGTACAGGAAAGGAGGGAGGGGCTGGTGGGAGGGGCCGGTGGGAGGGGCCGGTGGGCTGGCTCAGCAGGTAAAGGTGCTTGCTGCCAAGTGATGGCCTTAGTTCAATCCTGGAACCCACATGGTGGAAGGAGAGAGCTGCCCTCTGACCTCCACATGCACACCATGGCATGAGAATGTAAACAGCTAAACTGTAGAGGAATTTGAAACCAGCAACATGGCTGCTCTGATCACATCCACAGACCTTGTAGGTCAGTGATCTGGCTGGAATGCAGACAGGCCCTTAGTGCATACCTTCAGCCCCAGAATATGAGTCTAATTAAGGGGCAGACAGAGTGACAGTCAGAGAAAGATGAGTCAGAGATAGGATACGCCCAGCTCTCAGGAGAAATACTAAGAGCAGCCCTAGGAGAACGAAGGGAGGTCAGTCGGTACGTCAGCGAGTGGGAGTTGGGTCAGGTGGGAGTCAGTGGAATGAGTGCAATGGTGTTTGTTGAGTTGGTGTGTGATTTCGTGTACTTGAGTGCAGGCCAGCAGAGGCAGCGGAAGCCAGAGAATAAGAAGGAGACAGAAGATGCGAACAGATTGCCAGAGGTAGTTCGAGGCCACGCAGAGCAATTCAGTGAGAAGCTGAGAGAAGCCAAACTGAATCAGCCAGTTTGGAGTGGAGTTTGATCCAGAACAGCTGAGTTGAACCAGCCAGCCAGAGTTCAGAAAGACTAGAAAGGGTGAGCTTATTCAGCAGTAAGCCTCCGAGATGACAATTACATCAGGCGAATAAAAGTTACTTTTACAGTAAGTGTCAAAAATAATTTAACGGAGCAGGAGAGAAACAGTCTGGCTTTACAGTCTTCTGTGCGTTTTGTACAGCAGTGTCATTTCCAATTCTTGCGCAAACGCTTACAGAAACACGAGGCGAAAGTAGAAAGTTAGCTTCTGGCTAAGCTGGGTGCTCCATGGCCAGACAGAGCTGGATCCAGGCTCGTCTAGCTGTGCTGCTTGCCCCAAGTGAGCCTTTCTCCTTTCTGATCCTCGGCTTGCCTGTTTATATGACGTGAGCCAAAGAAAACATCCTCCGTGCTCCGTTGGCATGAGAGTTAAATGGTGTTTATAAACAGCTCAGTTCAGTGTCGGGCGGACGCGAGGCTCCCAGTATAAACAGTGGCCACCGTTAGCATTTTGTCATTTAGGCTGGAGCTTCTTGAACATCCCCCACTCACACCCCTTCTCTACCAAGGGAACCTTTGACTTTGCATATAGGCCTACAAGATAGGCTACGCATTAAACATTTTCTGGTGATAAATCTTTAAGTATAATTAAAACCATTTTTGCTCTACGTATGATTTTACGAGGTAGTGAAGACAGCCAAGTTTGCATACTAATGAGCACGATGTATTTTTAGTTTTACGTGAAGAATGAAAAGCCAGTTGGATATTTGGTCCTGTAGGTAGGAGTGTATCTCTGGTGATTTCCGGAGTTAACTGATATTTTGATATTTTTTATAATCGTCAATGCTGTGAGTACCACTTCACATAAACATTCGGCACAAAAGAGCAGCAGGAATGTTTACTGTTATTTCAGAAGTTATTAAGAATCCTACCCTAATTTGAAACCAAAACTGCTTTAACAATTTCTTAATGGCATCCAAGTCGGTGACTCAGACAGCAATTTTTAAAACCAACTTATCCTTTCTAACACAATTTAAAGGTACATTGGTTTTAGACTGGCAGACTGAAGGAAGACAGAGGGCAAAAACCTGAAGAGCCTTTGTTAAATCATTGTTTCTCTGAGCTCGGAAAACCCGTGTGTACCGGAGGGAGACTGCAGTCCCTAGCATGCAGTAGTCTTGCATGTCAGCTAAGGTGTCTCAGGCCTCGCTCTCTCGAGTCATGGGGTGTGACAGCATGCTCAGTGCGGGGCAACCCACACACTGTGTTCAGAACTAGACTGCAGTGAAGGGCTGGAGAGATGGCTCAGTGCTTAAAAGCACCGCTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCAGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTGCAGTGTACTCATAAAAACAAAAATAAATCTTTTTTTTTTAAAGACTGCAGTGAGCCACAGGACGCCATGCCACCCATGTAAGGACTGCCGGAAATGCCCGGGATTCTTTACATGTTGGATTTTGATTACATTTTTGGTCCTTGTGTATTCAGAAACTTGTTACTGTTGCTAGCCCGTGTACAGTTCCCACTCTGATAGCTGGCTTTAGATGGCTGTAATAACACTGTGACCAAGAGCAATCTGGGGAGGAAAGAGTTTCTTTACAGTTAGCTTCCACATCCCAGGTCACAGTTCACTGAGGGACTCAAGGCCGAAACTGAAGCTATGAAGGGACACTGCCTCCTGGCCTGCTCCTCCTGACTTGTCCAGTTTATTTTCTTACACACCCCAGGACCACCTGCCCAAGGGTGCTTCCACATCAGTCATTAATCAAGAAAATGGCCCAGAGGCTTGTCTCCAGGCCAGTCTGACTAGAGTATTTTCTCAGTTGAAGTTCTTTCTACTCAGGTGACAAACTGACAAACAAAACTAACCAGGACACTCACACTCATGGCTCTCGGTGGAACTGAAACCCACAGTTTAAGAAGCTGGAATCTAAGCATCACAAGAATCCTATAAGGCCTGTTTTAATTACCGCATTGTGATGGTTTGTATATGCTGGGCCCAGGGAGTGGCGCTATTAGGAGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGTCACTTTAAGACCCTCATCTTAGCTGCCTGGAAGTCAGTCTTCCACTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTGGATGCTGCCATGCTCCCGCCTTGATGATAACGGACTGAACCTCTGAACCTGTAAGCCAGCCCCATGTGAATGTTGTCCTTATAAGAGTGCATGGTGTGCAGTAAAGCCCTAACTAAAACACTCATTTTACAAGTGAGGGAAATGGGGTTCCGTTGTATAGACCTGAGGCTCAGGGTCTCATTTCCCTCCACGGGCATCTGAATCCAGAAAGAGGGAAAGAAAAGAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAATAAACATAACAAAGTAAGTCTTTCAGCTTGAGGCTGAAGCTGCTAAAAAAAAGTGCCTGTGTGGTCACTGTGAGCTGCCTCAAATTTTCAGCAGCTAATTCTTGACTGCCACTCTTACCAAAAAGAACTGTCATGGCGATAGGTAAGTGTGTAACAGCTATAACCCAAGATGATCATCGCGGTAGCACGTGAGTACTTCCTGTTTAGTCCTCCGTTCTCGGAGTGTCTGACTGGCTTGCAAGCTAACAGCTAGGTGGTAAAGCACCTCCTGTGTTCTCCATCTCTTGGCTCCAG
Seq C2 exon
GGTACTACTGTACTCCCGATGCTGTCTTCCGTCATGCTGGATCAAAAGGAGTTTGCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAGACAGACTACTTTGTTCCCTTCTCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013291:ENSRNOT00000017840:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]