MmuINT1008091 @ mm10
Intron Retention
Gene
ENSMUSG00000078787 | Cyp2t4
Description
cytochrome P450, family 2, subfamily t, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2686296]
Coordinates
chr7:27155114-27155795:+
Coord C1 exon
chr7:27155114-27155303
Coord A exon
chr7:27155304-27155632
Coord C2 exon
chr7:27155633-27155795
Length
329 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
3' ss Seq
CTCCATGGCACTTCCCATAGCTC
3' ss Score
5.42
Exon sequences
Seq C1 exon
AGACAGGATGGTCACCTGCTTGGCGTTGCTGCTGCTGCTGCTGATTCTAATGCTGTTGCTTTGGTGGGGTGGGGTGGTCCGCCGCCAAGCTCAGATGCAGAAAGACTTACCCCCAGGGCCCGCACCTCTCCCGTTGCTGGGGAACTTGCTACAACTACAGTCTGGAGACTTGGACCGTGTGCTCATGGAG
Seq A exon
GTAGCTTCTACTGTGGGTTGGGGGAGGTGGATTTATGAAGGTGCTGTTGTGCCCAGCCAGAAGAGGGGTAGAAATCCCAGTTCACTGAAGAGACAGGATTGGGAGCCTGGACTCCTGTGTCTGAGGGAGGAAGGCTGGAGTCTGGTCCCCTGTGTCTGAGGGAGGACAGTGAGGCCTGGACCCCTGTGTCTAAGAGCTGATGCCTAGACTCCAGGGTCTGAAAAGTGAGGGGCGGTTTAGAACTAGACCTGTAGAATGAGGGCATGAGACGGAAACTTTGGGATCTAAGGAAGATGAGAGCTCTGAGGTCTCCATGGCACTTCCCATAG
Seq C2 exon
CTCTCCAGCCACTGGGGCCCAGTGTTCACTGTATGGCTGGGCCCGCTCCCTGCAGTGGTGCTGTGCGGCTATGAGGCGCTCCGAGATGCATTAGTACTGCAAGCAGATGCGTTCTCCGGCCGCGGGGCCATGGCTGTCTTCGATCGCTTCACCTGCGGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078787:ENSMUST00000108385:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=42.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGATGGTCACCTGCTTG
R:
CAGGTGAAGCGATCGAAGACA
Band lengths:
344-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types