RnoINT0044421 @ rn6
Intron Retention
Gene
ENSRNOG00000028891 | Cyp2t1
Description
cytochrome P450, family 2, subfamily t, polypeptide 1 [Source:RGD Symbol;Acc:620086]
Coordinates
chr1:83965798-83966383:+
Coord C1 exon
chr1:83965798-83965994
Coord A exon
chr1:83965995-83966260
Coord C2 exon
chr1:83966261-83966383
Length
266 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
3' ss Seq
CCATATGGCACTTCCCATAGCTC
3' ss Score
5.71
Exon sequences
Seq C1 exon
CAGACAGGATGGTCACCTGTGAGGCAACGCTTCTGCTGCTGCTGATTCTAACGCTAATGCTTATGTCGTGGGGCTGGTTGGCCCACCAAGCTCGAGCTCGGATGCAGAAAGACTTGCCCCCTGGGCCTGCACCGCTTCCCTTGCTGGGGAATTTGTTGCAGCTACAGTCTGGACACTTGGACCGTGTGCTCATGGAG
Seq A exon
GTAGCTCCTACTGTGGGCTGGGAAGAGAGGGTAGAAATCCTACTTCACTGAAGAGACAGGATTGGGAGCCTAGACCCCTGTGTCTGAGGAAGGACAGTGAGGCCTGGACCCCTGTGTCTAAGAGCTAGTTTTAGACCCCAAGGGTCTGTAAAGGGAGAGGCGGTTTAGAACTCCTAGACCTGTGGAATGAGGGGGTGAGGTGGAAACTTTTGGGTCTGAGGAAGATGAGAGCGCTGAGGTCTCTTCCCATATGGCACTTCCCATAG
Seq C2 exon
CTCTCCAGCCGCTGGGGCCCAGTGTTCACCGTGTGGCTGGGCCCGCGCCCTGCCGTGGTGCTGAGCGGCTATGCGGCGCTGCGGGATGCATTAGTACTGCAGGCAGATGCTTTCTCTGGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028891:ENSRNOT00000068322:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=41.3)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTCACCTGTGAGGCAAC
R:
GAGAAAGCATCTGCCTGCAGT
Band lengths:
306-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]