MmuINT1008690 @ mm10
Intron Retention
Gene
ENSMUSG00000030409 | Dmpk
Description
dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]
Coordinates
chr7:19087494-19088264:+
Coord C1 exon
chr7:19087494-19087700
Coord A exon
chr7:19087701-19088000
Coord C2 exon
chr7:19088001-19088264
Length
300 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TTGCTTTTCTTTCTAAATAGGAA
3' ss Score
11.31
Exon sequences
Seq C1 exon
GTGAGGTCGCTGGTGGCTGTGGGCACCCCGGACTACCTGTCTCCTGAGATTCTGCAGGCCGTTGGTGGAGGGCCTGGGGCAGGCAGCTACGGGCCAGAGTGTGACTGGTGGGCACTGGGCGTGTTCGCCTATGAGATGTTCTATGGGCAGACCCCCTTCTACGCGGACTCCACAGCCGAGACATATGCCAAGATTGTGCACTACAGG
Seq A exon
GTGAGCACAAGCACCATGCAGGGGGGCTGACTTAGTGGCTTGTGCTCCCAGACTGTCTTTTTTAAAAGATATTTATTTATATGTGTGTGTTTTCTGTGTATGTATATCTGTGCACTGAGTAGGTGTGCGAAGGTCAGAGGGCATGGGATCCCCTGGAACTGGAGTCACAGACTATTGTGTGCTGCCATGCTGAGTGCTGGGAAACAGAACCTTGATCACTCTGCAAGAGCAGCCAGTGCACTGAAACGACAGAGCCAGCTCTGCAGCCCAGGGCTAACTGTTGCTTTTCTTTCTAAATAG
Seq C2 exon
GAACACTTGTCGCTGCCGCTGGCAGACACAGTTGTCCCCGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGTGTCCTGCTGAGATAAGGCTAGGTCGAGGTGGGGCAGGTGATTTCCAGAAACATCCTTTCTTCTTTGGCCTTGATTGGGAGGGTCTCCGAGACAGTGTACCCCCCTTTACACCAGACTTCGAGGGTGCCACGGACACATGCAATTTCGATGTGGTGGAGGACCGGCTCACTGCCATGGTGAGCGGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030409:ENSMUST00000032568:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.3=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.4=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGACTACCTGTCTCCTGAG
R:
GTACACTGTCTCGGAGACCCT
Band lengths:
352-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types