RnoINT0048369 @ rn6
Intron Retention
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79992596-79993288:+
Coord C1 exon
chr1:79992596-79992802
Coord A exon
chr1:79992803-79993039
Coord C2 exon
chr1:79993040-79993288
Length
237 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CTAAGTTTCTCTCTCAATAGGAA
3' ss Score
9.15
Exon sequences
Seq C1 exon
GTGAGGTCGCTGGTGGCTGTGGGCACCCCGGACTACCTGTCTCCTGAGATTCTGCAGGCTGTTGGTGGAGGGCCTGGGGCAGGCAGCTACGGGCCAGAGTGTGACTGGTGGGCACTGGGCGTGTTTGCCTACGAAATGTTCTATGGGCAGACACCCTTCTACGCCGACTCCACAGCCGAGACGTATGCCAAAATTGTGCATTACAGG
Seq A exon
GTAAGCATGGGCACCATGTAGGGAGGTACTTATGTGTGTAAGTGTTTTCCCTGCATGTTTGTCTGTGCCCTGAGTCAGTGCCCGTGAAGGTCTGAGGGCATGGGATCCCCTGGAACTGGAGTCACAGACTGCTGTCTGCTGCCATGTTGAGTGCTGGGAAACAGAACCATGACTGCTCATAAAGGACTGAGCCAGCTCTGCAGCCCAGGGCTAAGTCCTAAGTTTCTCTCTCAATAG
Seq C2 exon
GAACACTTGTCTCTGCCTCGGGCAGACATGGGTGTCCCTGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGTGTCCTGCTGAGATAAGGCTCGGTAGAGGTGGGGCAGGTGACTTCCAGAAGCATCCTTTCTTCTTTGGCCTTGATTGGGAGGGTCTCCGGGACAGCGTGCCCCCCTTCACACCAGACTTCGAGGGTGCCACAGACACATGCAATTTTGATGTGGTGGAGGACCGGCTCACTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085:ENSRNOT00000020428:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.3=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.4=53.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGACTACCTGTCTCCTGAG
R:
ATGCTTCTGGAAGTCACCTGC
Band lengths:
306-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]