DreINT0009061 @ danRer10
Intron Retention
Gene
ENSDARG00000074914 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr10:359616-363451:-
Coord C1 exon
chr10:363254-363451
Coord A exon
chr10:359680-363253
Coord C2 exon
chr10:359616-359679
Length
3574 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTGTGTGTGCGTGCGTGCAGGAT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTGCACTCGGCGGTGGCGGTCGGGACTCCAGATTATCTGTCTCCAGAACTCCTGCGGGCGGTGGAGGCTGGTGGGGGATACGGATCTGACTGCGACTGGTGGGCTCTAGGCGTCTGCGCATATGAGATGCTGCTGGGAACCACACCGTTCTATGCAGAGTCCATCTCTGAGACCTACGCCAAAATCATTCACTTCAAG
Seq A exon
GTAAAGCAAATCAGAGCTGTGGGTGGGTAGAACATAACCAGAACATAAACTGAAACTAACTTGAACCTAACCTGAACATAACCAGAATATAACTAGAACATAACCTGAACATAACCAAAACATAAACTGAACAATGCCAGAACATAAACTGAGCAATGCCAGAACATAACTTAAACATAAACAGAACAGAAACTGAACATAGCCTGATCATAAACTAAACATAATCTGATCATAACCTGAACATAACCAGAACATAAACTGAAACTAACCTGAACATTACTAGAACATAACCTGAATATAACCTAAAGTGAACATAACCAGAATATAGCCAGAACACAAACTGAACATAACCTGAACATAGCCATAACAAACTGAACAATGCCAGAACATAACTTAAACATAAACAGAACATAAACTGAACATAGCCTGACCATAAACATACCATAACTTGAACACAACCAGAACATAAACTGAAACTAACTTGAACCTAACCTAAACATAACCAGAATATAACTAGAACATAACTTGAACATAACCAAAACATAACCTGAACATAGCCAGAACATAAACTGAGCAATGCCAGAACATAACTTAAACATAAACAGAACAGAAACTGAACATAGCCTGATTATAAACTAAACATAATCTGATCATAACCTGAACATAACCAGAACATAAACTGAAACTAACCTGAACATAACTAGAACATAACCTGAATATAACCTAAAGTGAACATAACCAGAATATAGCCAGAACATAAACTGAACCTGAACATAGCCATAACAAACTGAACAATGCCAGAACATAACTTAAACATAAACAGAACATAAACTGAACATAGCCTGACCATAAACATACCATAACCTGAACATAACCAGAACATAAACTGAAACTAACTTGAACCTAACCTAAACATAACCAGAACATAACCTGAACATGACCTGAATCTAAAGTGAACTTAACCTGAACATAGCCAGAACATAACCTGAACGTAATGTGAACATAAACTAAACAATGCCTTAATAAATCAGAACATGACTAAAACATCAACTGATTATGGTTATATTATGTGTCAAGCTGAAATAAAATAAACAAATGAATATATATATTGAATAAGATATGCAAGTTTATATAATTTATATAACCACCCGTGAGATGTATGCATGTGCTAATGAATGAATCACTCCCTGAGATGACTCCTCGTTCAAGAATCACATTAAAGATTCATTCAAAATAAATGAATCATTCAACAACGACTCATCATGAAATACATGTGCAGCAATAAATCAAACATAAAAAATAGACATTGCCCCGAGCTCCTATCAGAGATCTCAGCAGTTTATTAGTGGCCAGCGAGAAATAGGGGAAGCAGATATACACTTCATCTTTCACAGTGTAAATAAAGTTCACTGCTTAACAAAAGCTTATCTTAGAGCTTCCTCTTGTGTGCAGAAAAAGTGAAACTAATCATCAGAAATGACCCTGAAGCTTAAAGGTGAGCGTCTGCTTGAGGAAGCCAGATGAAGGCTATTACTGACCAATTAAAATGATGAAACCGAAACAGGCAGTATTGTGTGTTTAAAGTGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACACATAATCTGATCATAACCTGAACATAACCAGAACATAAACTGAAACTAACCTGAACATTACTAGAACATAACCTGAATATAACCTAAAGTGAACATAACCAGAATATAGCCAGAACACAAACTGAACATAACCTGAACATAGCCATAACAAACTGAACAATGCCAGAACATAACTTAAACATAAACAGAACATAAACTGAACATAGCCTGACCATAAACATACCATAACTTGAACACAACCAGAACATAAACTGAAACTAACTTGAACCTAACCTAAACATAACCAGAATATAACTAGAACATAACTTGAACATAACCAAAACATAACCTGAACATAGCCAGAACATAAACTGAGCAATGCCAGAACATAACTTAAACATAAACAGAACAGAAACTGAACATAGCCTGATTATAAACTAAACATAATCTGATCATAACCTGAACATAACCAGAACATAAACTGAAACTAACCTGAACATAACTAGAACATAACCTGAATATAACCTAAAGTGAACATAACCAGAATATAGCCAGAACATAAACTGAACCTGAACATAGCCATAACAAACTGAACAATGCCAGAACATAACTTAAACATAAACAGAACATAAACTGAACATAGCCTGACCATAAACATACCATAACCTGAACATAACCAGAACATAAACTGAAACTAACTTGAACCTAACCTAAACATAACCAGAACATAACCTGAACATGACCTGAATCTAAAGTGAACTTAACCTGAACATAGCCAGAACATAACCTGAACGTAATGTGAACATAAACTAAACAATGCCTTAATAAATCAGAACATGACTAAAACATCAACTGATTATGGTTATATTATGTGTCAAGCTGAAATAAAATAAACAAATGAATATATATATTGAATAAGATATGCAAGTTTATATAATTTATATAACCACCCGTGAGATGTATGCATGTGCTAATGAATGAATCACTCCCTGAGATGACTCCTCGTTCAAGAATCACATTAAAGATTCATTCAAAATAAATGAATCATTCAACAACGACTCATCATGAAATACATGTGCAGCAATAAATCAAACATAAAAAATAGACATTGCCCCGAGCTCCTATCAGAGATCTCAGCAGTTTATTAGTGGCCAGCGAGAAATAGGGGAAGCAGATATACACTTCATCTTTCACAGTGTAAATAAAGTTCACTGCTTAACAAAAGCTTATCTTAGAGCTTCCTCTTGTGTGCAGAAAAAGTGAAACTAATCATCAGAAATGACCCTGAAGCTTAAAGGTGAGCGTCTGCTTGAGGAAGCCAGATGAAGGCTATTACTGACCAATTAAAATGATGAAACCGAAACAGGCAGTATTGTGTGTTTAAAGTGCAACTCTCTCAGTGTTTTCTCTTGTGAACTCTTGCTTGAGGGATATTATTATTATTATTATTAATAATTAATAGCCACGTCTGTTTTTGAGGAATAGATGTGTTCACTATCTTGTACAATAGAGCTTGGCATTAAAATATAAGCTGTAAAACACAAACATTGGGCCTTCAACTTTGCATAAAATCCTTGCATTTTAATTGTATGTTAAATATATGATTTGCTCACTGTATATTGTCATATATCAGATTTCTTTCTGGGGTAAATTCTGTCATAGATTTAATCATTAAAGAATTTTTACAATTTATTTAAATAGACTAATGAACTGTTGTTATATTGTCACTTTGCACCTTTAAATATTAAAGTAATTCAGTCCATTCTGTGAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCAG
Seq C2 exon
GATTATTTTGGGTTTCCAGCCAGTGGTGTGCAGGTGTCTGAGCCGGCGCGTGCTCTGGTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074914:ENSDART00000114487:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(27.8=100)
A:
NA
C2:
PF0006920=Pkinase=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]