MmuINT1019939 @ mm10
Intron Retention
Gene
ENSMUSG00000015341 | Golga7
Description
golgi autoantigen, golgin subfamily a, 7 [Source:MGI Symbol;Acc:MGI:1931029]
Coordinates
chr8:23244731-23245964:-
Coord C1 exon
chr8:23245863-23245964
Coord A exon
chr8:23244794-23245862
Coord C2 exon
chr8:23244731-23244793
Length
1069 bp
Sequences
Splice sites
5' ss Seq
GTTGTATCT
5' ss Score
-2.19
3' ss Seq
TTAACGGCCATGCTGTTCAGATT
3' ss Score
4.2
Exon sequences
Seq C1 exon
GTCTTGAAGAAAGTCTCCAAATACATTCAAGAACAGAATGAGAAGATATATGCTCCCCAAGGCCTCCTCCTAACAGACCCCATTGAGAGAGGACTTCGAGTT
Seq A exon
GTATCTTTTTAGTCCAGCTCAGAAGGTCTAAATATTTCTTAAAAAAAAAAAAGTCATGATGGTATTATTTGGCCTTGGCCAGAGAGAATTTAACTTTTACTCCTTCTTAGGTGTGTCTTCAGAATTGTTACGTGAATGATATACCATAGGCATCCCTTTCCCAGCATGTTCTTAAACCGTGGCTTTCTGAACTTGGCATTGTCTGGGTCTCTGGACTGTTTAGTGTTCTGGTTCCCATCTTCCTTGGTTCTGACAACATCTTGTAATAGTGAAGCTTGTAAGAGTGACATGTCCCAGCTGCAGGAACTCTGCGCACAGAGCCCCTTGAAGTGTGCAGTGAGACATGCCATCCAAATGAACTGCAGTCTACAGGTCCATCTGGCCAGTTGCAAGCTGTTACAGCTGCCAGTGGATCATCTCATCGTCTTCGGCTCAATGTCCGTAGTGTAGAGGCAGGAGGCCTTGAGAAATTAAGTGGATTTAGTAAATTGGAAAAACTGCATTTACTTAATAAAGTGATGATTAAGTGATTTTAAGCTAGTCACATAATCCTAGGCCCTGCGGTGATAATTTTCGCAGTTTTAATGTACTCTCCAGCAATGGTTCTTTTAAGGGTCATGAACCTTCTCCCACACAAATATTTTCATATAATTTGAGGGCATTTTTGAGTCCCTCGATCTCTCTGAGTTCTCAGTTGTGAGTCTACTACTAGCTACACATACAGAATACTTCCCAGGGGCTAGAGAGGTGGCCCGGCCATTAGCGCTCACTGGCTGCTCTCGCAGACTCTGGCTTGGTTCCCAGTGCTCAGTGACAGCCATAATTCCAACTCCAGGGCATCCATGCAGACAGAGCATATTTACAAATACAAAAGAAAATACTTTGCAGATTTTTTTGTAAAACTAGTGTTTTAAAAGTAACTGCTCTCATAATTGCAGGTAATTTATTAAGCTTTCTGTAAAGCAGAAAAAGTGAATCTGCACACAGCAGACCGTGCAGACTGTCTTGCTGTAGTCTGTCTGCTTCGTGTGTTACATTCTCGTGTTTTCTTAACGGCCATGCTGTTCAG
Seq C2 exon
ATTGAAATCACCATCTATGAAGACAGAGGTGTGAGCAGTGGAAGATAAACCACAGAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015341:ENSMUST00000051094:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(28.7=100)
A:
NA
C2:
PF102564=Erf4=PD(1.7=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types