GgaINT0135643 @ galGal4
Intron Retention
Gene
ENSGALG00000003483 | GOLGA7
Description
Golgin subfamily A member 7 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZLC9]
Coordinates
chr22:2586064-2586693:+
Coord C1 exon
chr22:2586064-2586165
Coord A exon
chr22:2586166-2586629
Coord C2 exon
chr22:2586630-2586693
Length
464 bp
Sequences
Splice sites
5' ss Seq
GTTGTATCC
5' ss Score
-4.57
3' ss Seq
CTAACAGCCTTTCTACGCAGATT
3' ss Score
6.66
Exon sequences
Seq C1 exon
GTTCTAAAGAAAATTGCCAAGTTCATTCAGGAACAGAATGAGAAGATCTATGCTCCTCAGGGCCTCCTTCTGACCGACCCCATTGAAAGAGGACTAAGAGTT
Seq A exon
GTATCCTTGTGTGGTTTCTAAGATTGTTTCCTAATTTGTCAGTCTACAATATGCTACCTGTTTCTCTGTTACTGTGGCGTCCTCTAGTCATGCTTGATCTGTGATACTGCAGAATATATGATCAGTCTCGTCACTCTCAGTTGTGTGCTGTCCTTTGGTCAGATATTCATACTTCTTTCTGTTGTGTAGCTTTTCCCAAGATTTAGGAGAAGATTGCAAGGTTCACAAGCTCTTTGTATGCAGCATCTTGTGTTCTTGTTGTTGGAACAGTCCTGACCTGCATAGGTGACTGGTTTGATCTGACAAGTCAGGTGTGCTGTTCTGTTTGCTTTGTAACTCTGAAATTAATCTTGAAAAAGCAGCTATGAAGCAAAAAGATCAAAAGTTCTAATATCGTAACGATTTTTCACCTTTGTTTTTGTAAACTTCTTATAGTGTATTTCCCTAACAGCCTTTCTACGCAG
Seq C2 exon
ATTGAAATTACCATTTATGAAGACAGAGGCATGAGCAGTGGAAGATAAAACTGTGGAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003483:ENSGALT00000005511:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(28.7=100)
A:
NA
C2:
PF102564=Erf4=PD(1.7=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]