BtaINT0067905 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027626 | GOLGA7
Description
Bos taurus golgin A7 (GOLGA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001035484]
Coordinates
chr27:36120015-36121398:+
Coord C1 exon
chr27:36120015-36120116
Coord A exon
chr27:36120117-36121335
Coord C2 exon
chr27:36121336-36121398
Length
1219 bp
Sequences
Splice sites
5' ss Seq
GTTGTATCT
5' ss Score
-2.19
3' ss Seq
TTAACAGTCATGCTGTTCAGATT
3' ss Score
4.02
Exon sequences
Seq C1 exon
GTCCTGAAGAAAGTCTCCAAATACATTCAAGAGCAGAATGAGAAGATCTATGCCCCACAAGGCCTCCTCCTGACAGATCCCATCGAGAGAGGGCTGCGAGTT
Seq A exon
GTATCTTTTCAGTCCAGATCATGAGGTCTGAGTATTTGATGGCCCCGTCAGCCCGGGTAAGAGAGGATTTCCCTCAGTTCCCGAACCTGCTGTGGGCTGTGCTGCTGAAAGGCACACTCTCCCTCCAGCACAACTCCTTCCCGGGCGTCGTGCTGGGCTCTGGAGCATTTAGTGTTGGGGCTGCCGTTGTCTTGGTGGCTGTGCAGCATCTTGTAGTAATAATGGGAGTCGGGTGAGTCATGCATCTCAGCTGCAGAGGCTGCACCAAAGGCCCCTTTGAAATGCATGAACTCAGTGCGCAGAGAGCTCATCGTCCAAATAAATCTCAGCTCCGTGGGTTCATCTGACTCGTTGAAATCAGTTACAGCTGCCAGATGTATCATTTCATTACCTTTGACATAACTGCATATTTTAGAGGCAGTTGACTTTGAAAATCATGAAGTTTATTTTGGTAATTTGGTAAATAAAATTGCAAAAAAAAAAAAAACTAATTTAGCTTGATAACAAGTAAAATAAATAACTGGGTAAAATAAAATTTTTTTAAAACCTAGGTCAGATAATCCCAGGCCTTCCGGCTGATAAGCATTTCAACGGCTTTATTATACTTGTATCAGTGTCTCTTAAACTTTTAGAGGTCGTGAGCTCTCTCACAAAAAAAAGTTTGCATACAATTTCAGGGTGCTTTGCACCCCTGACGTCATTACCTCACTATGGATGCTCAGTTAAGAGCATCCCCCTTAGTTCTGCAATAAAGTATCCTTTTTCAGATTCTTTTCTTCTTTTAAAAAGTAAATAATGTCTGGAGAGGAACTCTGTGGTATACCACAAGCAATTACATTTCTTGAATTTTTCAGCAAGGTGTGGAAAACACCCTGTTTAACTTAAGCAGGAGAAATTTTTAATGTTTTGAAACAAGTAAAGCAAATAATAATTATTGATAATTTAAAATGATGTAAATGGTAATGTAAGATAAGTAAAGACAAGGGGGACTTTCCTAGCGGTCCAACAGTTAAGACTCCGGCCTCCAACGGCGGTTGCAGGTTCAGTCTCACGCGGGGAACGAAGATGTCCCACACGCCGCGAGGCGCAGCCAAAACAACTTTTTTTTTTTTAAGTTAAGTAAAGACAAGTCCGCACAGATCACACCCATCTTCTCTCCGTAGTCCCTTTTTCTGTGTTCTGTTCTCCAGTGTGTTTTCTTAACAGTCATGCTGTTCAG
Seq C2 exon
ATTGAAATTACCATTTATGAAGACAGAGGCATGAGCAGTGGAAGATAAACCATAGAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027626:ENSBTAT00000039788:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(28.7=100)
A:
NA
C2:
PF102564=Erf4=PD(1.7=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]